De Bruijn graphs in Rust
☆72Jul 22, 2024Updated 2 years ago
Alternatives and similar repositories for rust-debruijn
Users that are interested in rust-debruijn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rust utility code☆31Feb 9, 2024Updated 2 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- Single-Cell RNA-seq pseudo-aligner☆53May 6, 2024Updated 2 years ago
- Rust bindings to minimap2 library☆113Sep 14, 2026Updated last week
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast and scalable minimal perfect hashing for massive key sets☆154Jul 8, 2024Updated 2 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- ☆15Apr 6, 2016Updated 10 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 months ago
- Self-contained, multi-threaded fasta/q parser☆50Mar 10, 2026Updated 6 months ago
- compacted de Bruijn graph construction in low memory☆101Nov 4, 2025Updated 10 months ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆19Oct 26, 2025Updated 10 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Fast FASTX parsing and k-mer methods in Rust☆215Sep 14, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Rust wrapper of the BWA C API☆20May 23, 2025Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.☆20Oct 15, 2018Updated 7 years ago
- FASTA and FASTQ parsing in Rust☆85Mar 14, 2025Updated last year
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆142Jun 23, 2024Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆48Aug 28, 2026Updated 3 weeks ago
- An efficient index for the colored, compacted, de Bruijn graph☆112Jun 19, 2026Updated 3 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Pairwise nucleotide alignment benchmark of Rust bindings☆32Jul 27, 2023Updated 3 years ago
- A genomic minhashing implementation in Rust☆101Jul 8, 2026Updated 2 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆21Jul 19, 2023Updated 3 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- Bit-packed and well-typed biological sequences☆46Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆57Feb 19, 2020Updated 6 years ago
- Compacted and colored de Bruijn graph construction and querying☆101Updated this week
- ☆24Apr 2, 2021Updated 5 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆89Jan 25, 2024Updated 2 years ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆184Sep 19, 2024Updated 2 years ago