10XGenomics / rust-debruijnLinks
De Bruijn graphs in Rust
☆70Updated last year
Alternatives and similar repositories for rust-debruijn
Users that are interested in rust-debruijn are comparing it to the libraries listed below
Sorting:
- FASTA and FASTQ parsing in Rust☆78Updated 6 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- bioinformatics toolkit in rust☆90Updated 3 months ago
- an API for intersections of genomic data☆75Updated this week
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆136Updated 7 months ago
- Substring index for paths in a graph☆60Updated 5 months ago
- ntHash implementation in Rust☆36Updated last year
- The D4 Quantitative Data Format☆166Updated 4 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆109Updated 11 months ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- Alignment-based gene expression quantification☆28Updated 3 weeks ago
- gia: Genomic Interval Arithmetic☆64Updated last year
- Compacted and colored de Bruijn graph construction and querying☆84Updated 3 weeks ago
- sfasta☆35Updated 4 months ago
- Per-base per-nucleotide depth analysis☆137Updated last month
- ☆57Updated 3 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆89Updated 4 months ago
- ☆47Updated 2 years ago
- Grep for FASTQ files☆98Updated 5 months ago
- GBWT in Rust☆42Updated 5 months ago
- Fasten toolkit, for streaming operations on fastq files☆79Updated 5 months ago
- Adaptive semi-global banded alignment on string graphs☆66Updated 7 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆31Updated last year
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- Benchmarking pairwise aligners☆36Updated 7 months ago
- expressions on VCFs☆85Updated 5 months ago
- Rust bindings to minimap2 library☆101Updated 2 weeks ago
- ☆50Updated 3 years ago
- A pairwise sequence aligner written in Rust☆136Updated last month