10XGenomics / rust-debruijnLinks
De Bruijn graphs in Rust
☆72Updated last year
Alternatives and similar repositories for rust-debruijn
Users that are interested in rust-debruijn are comparing it to the libraries listed below
Sorting:
- FASTA and FASTQ parsing in Rust☆80Updated 9 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- The D4 Quantitative Data Format☆169Updated 3 weeks ago
- ntHash implementation in Rust☆36Updated last year
- bioinformatics toolkit in rust☆93Updated 2 months ago
- Compacted and colored de Bruijn graph construction and querying☆91Updated 2 weeks ago
- Single-Cell RNA-seq pseudo-aligner☆52Updated last year
- an API for intersections of genomic data☆136Updated 2 weeks ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆137Updated 10 months ago
- A pairwise sequence aligner written in Rust☆143Updated 2 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆110Updated last year
- Substring index for paths in a graph☆60Updated 2 weeks ago
- ☆49Updated 2 years ago
- ☆57Updated 3 years ago
- gia: Genomic Interval Arithmetic☆64Updated last year
- Fasten toolkit, for streaming operations on fastq files☆81Updated 2 months ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Updated 2 years ago
- GBWT in Rust☆43Updated 2 weeks ago
- Per-base per-nucleotide depth analysis☆141Updated 2 weeks ago
- Alignment-based gene expression quantification☆30Updated 4 months ago
- sfasta☆35Updated 7 months ago
- Rust bindings to minimap2 library☆102Updated last week
- A Rust library and command line tool for working with genomic ranges and their data.☆100Updated last year
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated last year
- ☆15Updated 2 years ago
- Tools for fiberseq data written in rust.☆62Updated last week
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Updated last year
- A high-performance BigWig and BigBed library in Rust☆110Updated 2 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Command line utility for working with next-generation sequencing files.☆37Updated 6 months ago