De Bruijn graphs in Rust
☆71Jul 22, 2024Updated last year
Alternatives and similar repositories for rust-debruijn
Users that are interested in rust-debruijn are comparing it to the libraries listed below
Sorting:
- Rust utility code☆32Feb 9, 2024Updated 2 years ago
- Single-Cell RNA-seq pseudo-aligner☆52May 6, 2024Updated last year
- Rust bindings to minimap2 library☆109Feb 22, 2026Updated last week
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- Self-contained, multi-threaded fasta/q parser☆48Jan 30, 2026Updated last month
- De Bruijn graph representation in low memory☆35Jul 6, 2024Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- Fast and scalable minimal perfect hashing for massive key sets☆149Jul 8, 2024Updated last year
- ☆15Apr 6, 2016Updated 9 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- compacted de Bruijn graph construction in low memory☆100Nov 4, 2025Updated 4 months ago
- Rust wrapper of the BWA C API☆18May 23, 2025Updated 9 months ago
- Fast FASTX parsing and k-mer methods in Rust☆210Jan 27, 2026Updated last month
- Compacted and colored de Bruijn graph construction and querying☆92Updated this week
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Nov 18, 2023Updated 2 years ago
- Bit-packed and well-typed biological sequences☆46Jan 20, 2026Updated last month
- A genomic minhashing implementation in Rust☆102Jun 17, 2025Updated 8 months ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆139Jun 23, 2024Updated last year
- FASTA and FASTQ parsing in Rust☆82Mar 14, 2025Updated 11 months ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆19Jan 22, 2026Updated last month
- A library of common biomedical types.☆40Apr 14, 2025Updated 10 months ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆361Jan 29, 2026Updated last month
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆57Feb 19, 2020Updated 6 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Oct 7, 2024Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Jul 19, 2023Updated 2 years ago
- ☆24Apr 2, 2021Updated 4 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Mar 12, 2024Updated last year
- Bitpacked sequence trait and implementation☆16Updated this week
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆19Oct 26, 2025Updated 4 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- kProcessor: kmers processing framework.☆10Oct 1, 2023Updated 2 years ago
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.☆20Oct 15, 2018Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Iterate over minimizers of a DNA sequence☆31Jul 12, 2024Updated last year