10XGenomics / rust-debruijnLinks
De Bruijn graphs in Rust
☆69Updated 10 months ago
Alternatives and similar repositories for rust-debruijn
Users that are interested in rust-debruijn are comparing it to the libraries listed below
Sorting:
- FASTA and FASTQ parsing in Rust☆77Updated 2 months ago
- ntHash implementation in Rust☆36Updated 10 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 11 months ago
- Compacted and colored de Bruijn graph construction and querying☆82Updated last week
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆30Updated last year
- bioinformatics toolkit in rust☆89Updated this week
- ☆47Updated 2 years ago
- sfasta☆35Updated last month
- Benchmarking pairwise aligners☆36Updated 3 months ago
- gia: Genomic Interval Arithmetic☆62Updated 9 months ago
- an API for intersections of genomic data☆75Updated last week
- ☆11Updated 2 years ago
- Bit-packed and well-typed biological sequences☆33Updated last month
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆48Updated 2 weeks ago
- Fasten toolkit, for streaming operations on fastq files☆79Updated last month
- GBWT in Rust☆43Updated 2 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆110Updated 8 months ago
- Iterate over minimizers of a DNA sequence☆29Updated 10 months ago
- Substring index for paths in a graph☆60Updated last month
- Adaptive semi-global banded alignment on string graphs☆67Updated 7 years ago
- Strain resolver for metagenomics☆73Updated 10 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- GFA parser in Rust☆31Updated 2 years ago
- Per-base per-nucleotide depth analysis☆129Updated 4 months ago
- Yet Another Chimeric Read Detector☆80Updated 7 months ago
- Fast FASTQ sample demultiplexing in Rust.☆62Updated last week
- Fast and exact gap-affine partial order alignment☆51Updated last month
- vcfdist: Accurately benchmarking phased variant calls☆80Updated last month
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆132Updated 3 months ago