Alternatives and similar repositories for rust-toolbox

Users that are interested in rust-toolbox are comparing it to the libraries listed below

• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated 2 months ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated last week
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated 10 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆78Updated 7 months ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆167Updated 6 months ago
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated 2 years ago
• TianyiShi2001 / bioinformatics-algorithms-rs
  Bioinformatics Algorithms implemented in Rust for Learners
  ☆31Updated 4 years ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆70Updated last year
• ostnam / rust-wfa
  ☆12Updated 3 years ago
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆129Updated last week
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆101Updated last week
• Daniel-Liu-c0deb0t / cute-nucleotides
  Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
  ☆128Updated 4 years ago
• 38 / grass
  ☆22Updated 3 years ago
• dcjones / coitrees
  A very fast interval tree data structure
  ☆125Updated 8 months ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆104Updated last week
• luizirber / niffler
  Simple and transparent support for compressed files.
  ☆80Updated 8 months ago
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆99Updated 4 months ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 2 weeks ago
• umccr / htsget-rs
  A server implementation of the htsget protocol for bioinformatics in Rust
  ☆46Updated 3 weeks ago
• Picani / fastax
  Make phylogenetic trees and lineages from the NCBI Taxonomy database
  ☆13Updated 2 years ago
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆91Updated 3 weeks ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆31Updated 9 months ago
• 10XGenomics / rust-bwa
  Rust wrapper of the BWA C API
  ☆18Updated 5 months ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆36Updated 4 months ago
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆25Updated 3 years ago
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated last year