Rust utility code
☆32Feb 9, 2024Updated 2 years ago
Alternatives and similar repositories for rust-toolbox
Users that are interested in rust-toolbox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-Cell RNA-seq pseudo-aligner☆52May 6, 2024Updated 2 years ago
- De Bruijn graphs in Rust☆70Jul 22, 2024Updated last year
- Rust wrapper of the BWA C API☆19May 23, 2025Updated last year
- Alignment-based gene expression quantification☆38Feb 8, 2026Updated 4 months ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Jul 19, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Rust wrapper for STAR aligner☆21Apr 13, 2026Updated last month
- ☆14Oct 14, 2020Updated 5 years ago
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- ☆14Jul 4, 2022Updated 3 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated last year
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆366Jan 29, 2026Updated 4 months ago
- Out-of-memory sorting of large datasets map / reduce style processing☆48May 14, 2026Updated 3 weeks ago
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.☆20Oct 15, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Convert 10x BAM files to the original FASTQs compatible with 10x pipelines☆68Feb 10, 2026Updated 4 months ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- A library of common biomedical types.☆40Apr 14, 2025Updated last year
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 5 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Jun 10, 2021Updated 5 years ago
- Fast and scalable minimal perfect hashing for massive key sets☆152Jul 8, 2024Updated last year
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆33Mar 20, 2026Updated 2 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated 2 years ago
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- BUS format specification☆13Nov 18, 2019Updated 6 years ago
- Bit-vectors and bit-slices for Rust☆29Apr 29, 2021Updated 5 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Obsolete!! Begin to turn to PrimerServer2☆10Jul 22, 2019Updated 6 years ago
- A set of command line utilities based on Rust-Bio.☆205Jun 24, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries☆45May 22, 2026Updated 2 weeks ago
- Go implementation of ntHash☆20Sep 16, 2021Updated 4 years ago
- A high-throughput analysis framework for Y-chromosomal next-generation sequencing data☆17Jun 11, 2021Updated 5 years ago
- A command line utilty for working with BINSEQ files☆38Mar 31, 2026Updated 2 months ago
- Fast FASTX parsing and k-mer methods in Rust☆211Apr 20, 2026Updated last month
- Count HLA alleles in single-cell RNA-seq data☆64Nov 5, 2021Updated 4 years ago
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆138Apr 30, 2026Updated last month