10XGenomics / rust-toolbox

Related projects ⓘ

Alternatives and complementary repositories for rust-toolbox

• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 2 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆72Updated 11 months ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆26Updated 5 months ago
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆23Updated 2 years ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆158Updated last month
• aseyboldt / fastq-rs
  ☆47Updated 2 years ago
• COMBINE-lab / terminus
  ☆57Updated 2 years ago
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆77Updated this week
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆50Updated 6 months ago
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆93Updated 10 months ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆28Updated this week
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆63Updated 4 months ago
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆122Updated this week
• TianyiShi2001 / bioinformatics-algorithms-rs
  Bioinformatics Algorithms implemented in Rust for Learners
  ☆30Updated 3 years ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆34Updated 4 months ago
• Daniel-Liu-c0deb0t / cute-nucleotides
  Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
  ☆116Updated 3 years ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆14Updated last month
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆14Updated last year
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 4 months ago
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆34Updated last week
• luizirber / niffler
  Simple and transparent support for compressed files.
  ☆75Updated 5 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆29Updated 6 months ago
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆71Updated last week
• 38 / grass
  ☆21Updated 2 years ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆76Updated 9 months ago
• 10XGenomics / orbit
  Rust wrapper for STAR aligner
  ☆15Updated this week
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆174Updated 2 weeks ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year