Alternatives and similar repositories for rust-toolbox

Users that are interested in rust-toolbox are comparing it to the libraries listed below

• zaeleus / squab
  Alignment-based gene expression quantification
  ☆30Updated 4 months ago
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆80Updated 9 months ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆169Updated last month
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆72Updated last year
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆129Updated 2 weeks ago
• Daniel-Liu-c0deb0t / cute-nucleotides
  Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
  ☆129Updated 5 years ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆52Updated last year
• rust-bio / rust-bio-tools
  A set of command line utilities based on Rust-Bio.
  ☆204Updated last year
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated 2 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• dcjones / coitrees
  A very fast interval tree data structure
  ☆125Updated 10 months ago
• ostnam / rust-wfa
  ☆12Updated 3 years ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆110Updated 2 months ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated last year
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆40Updated 8 months ago
• luizirber / niffler
  Simple and transparent support for compressed files.
  ☆81Updated 10 months ago
• TianyiShi2001 / bioinformatics-algorithms-rs
  Bioinformatics Algorithms implemented in Rust for Learners
  ☆31Updated 4 years ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆102Updated 2 weeks ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated 2 years ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 2 months ago
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆94Updated last week
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆203Updated 2 weeks ago
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆101Updated 6 months ago
• umccr / htsget-rs
  A server implementation of the htsget protocol for bioinformatics in Rust
  ☆49Updated this week
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆137Updated 10 months ago
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆15Updated 2 years ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated last year
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆25Updated 3 years ago