COMBINE-lab / quarkLinks
semi-reference-based short read compression
☆11Updated 6 years ago
Alternatives and similar repositories for quark
Users that are interested in quark are comparing it to the libraries listed below
Sorting:
- ☆21Updated 10 months ago
- ☆24Updated last month
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Updated 8 years ago
- ☆16Updated 2 weeks ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- ☆18Updated 7 years ago
- ☆24Updated 4 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Updated 5 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- ☆14Updated 2 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- ☆12Updated last month
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- Rust wrapper for the next generation (still currently in C++)☆28Updated 3 months ago
- ☆14Updated 5 years ago
- ☆15Updated 2 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10Updated 4 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆26Updated 3 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago