COMBINE-lab / quarkLinks
semi-reference-based short read compression
☆11Updated 6 years ago
Alternatives and similar repositories for quark
Users that are interested in quark are comparing it to the libraries listed below
Sorting:
- ☆24Updated last month
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- ☆21Updated 9 months ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- ☆16Updated this week
- nimble aligner that will map your reads to the references on a laptop☆11Updated 8 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- ☆24Updated 4 years ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Updated 6 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 5 months ago
- ☆18Updated 7 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Pan gGnome Viewer☆10Updated 2 months ago
- ☆14Updated 2 years ago
- Identification of structural variations☆12Updated 3 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- Long read to reference genome mapping tool☆13Updated last year
- Minimum plain text representation of kmer sets☆16Updated 7 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- ☆12Updated 2 weeks ago