COMBINE-lab / shoal
Improved multi-sample transcript abundance estimates using adaptive priors
☆20Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for shoal
- ☆12Updated 4 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- ☆12Updated this week
- A tool for Read Multi-Mapper Resolution☆24Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- ☆15Updated 2 months ago
- R package to quickly obtain count vectors from indexed bam files☆13Updated 3 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Chromatin segmentation in R☆19Updated 6 years ago
- ☆10Updated 2 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- ☆22Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 5 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 10 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆16Updated 3 months ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 8 years ago
- ☆22Updated 7 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago
- ☆18Updated 9 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago