Singular-Genomics / singular-demuxLinks
Singular Genomics Demultiplexing Tool
☆16Updated last year
Alternatives and similar repositories for singular-demux
Users that are interested in singular-demux are comparing it to the libraries listed below
Sorting:
- A FASTA/FASTQ format parser library☆20Updated last year
- ☆14Updated last year
- Rust wrapper for the next generation (still currently in C++)☆28Updated this week
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- JTK -- a regional diploid genome assembler☆24Updated 8 months ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆12Updated 6 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 8 months ago
- Rust library for processing sequencing reads.☆25Updated 10 months ago
- A minimap2 implementation with binseq inputs☆14Updated 2 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 9 months ago
- The python binding for D4 format☆16Updated 3 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 5 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 9 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- Rust UMI Directional Adjacency Deduplicator☆15Updated 5 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 3 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Python language bindings for bwa☆10Updated 2 weeks ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- ☆25Updated 4 years ago