Singular-Genomics / singular-demuxLinks
Singular Genomics Demultiplexing Tool
☆16Updated last year
Alternatives and similar repositories for singular-demux
Users that are interested in singular-demux are comparing it to the libraries listed below
Sorting:
- Rust wrapper for the next generation (still currently in C++)☆28Updated 2 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Toolkit for manipulating FASTA and SAM files☆19Updated last year
- A minimap2 implementation with binseq inputs☆16Updated last month
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 3 weeks ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆11Updated 6 years ago
- JTK -- a regional diploid genome assembler☆25Updated 11 months ago
- Python language bindings for bwa☆10Updated 2 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- Benchmarking pairwise aligners☆36Updated 7 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated last month
- A k-mer search engine for all Sequence Read Archive public accessions☆32Updated 10 months ago
- ☆14Updated last month
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- GBWT-based handle graph☆31Updated 2 months ago
- Rust library for processing sequencing reads.☆25Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 11 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 11 months ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 4 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 3 months ago
- A long read simulator based on badread idea☆22Updated 2 years ago
- ☆15Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Rust UMI Directional Adjacency Deduplicator☆14Updated 5 years ago
- ☆14Updated 2 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago