Singular Genomics Demultiplexing Tool
☆16Mar 5, 2024Updated last year
Alternatives and similar repositories for singular-demux
Users that are interested in singular-demux are comparing it to the libraries listed below
Sorting:
- ☆16Jan 6, 2023Updated 3 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆27Oct 28, 2021Updated 4 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated last year
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆12Apr 16, 2019Updated 6 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- ☆18May 10, 2023Updated 2 years ago
- Fast sequence distance estimates☆26Jan 29, 2026Updated last month
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Sep 13, 2025Updated 5 months ago
- ☆21Dec 26, 2025Updated 2 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- A long read simulator based on badread idea☆22Oct 7, 2022Updated 3 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- Implicit Interval Tree with Interpolation Index☆42Jul 13, 2022Updated 3 years ago
- GBZ file format for pangenome graphs☆46Feb 18, 2026Updated 2 weeks ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 7 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 5 months ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆45May 10, 2023Updated 2 years ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆11Apr 21, 2022Updated 3 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated last year
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- Build sourmash databases for genbank.☆11May 4, 2023Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- ☆12Sep 7, 2019Updated 6 years ago
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 2 months ago
- ☆15Jan 28, 2026Updated last month
- AlfaPang builds pangenome graphs without alignments or references.☆15Nov 7, 2025Updated 3 months ago
- A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)☆14Apr 9, 2024Updated last year
- Compacted and colored de Bruijn graph construction and querying☆92Updated this week
- De novo clustering of long transcript reads into genes☆19Dec 15, 2025Updated 2 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated this week
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Ultra-rapid detection of viral variants directly from sequencing data☆36Feb 17, 2026Updated 2 weeks ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- A Boolean Algebra for Genetic Variants☆12Updated this week