Fast and scalable minimal perfect hashing for massive key sets
☆154Jul 8, 2024Updated 2 years ago
Alternatives and similar repositories for rust-boomphf
Users that are interested in rust-boomphf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De Bruijn graphs in Rust☆70Jul 22, 2024Updated 2 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Single-Cell RNA-seq pseudo-aligner☆52May 6, 2024Updated 2 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Rust libraries and programs focused on succinct data structures☆169Updated this week
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated 2 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56May 29, 2024Updated 2 years ago
- Hardware go brrr bounded context suffix array construction algorithm☆19Nov 1, 2023Updated 2 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 4 years ago
- Rust wrapper of the BWA C API☆19May 23, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast FASTX parsing and k-mer methods in Rust☆213Jun 22, 2026Updated last month
- Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.☆23Dec 14, 2024Updated last year
- ✈️ PTHash is a fast and compact minimal perfect hash function.☆262May 6, 2026Updated 2 months ago
- ☆19May 10, 2023Updated 3 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Compacted and colored de Bruijn graph construction and querying☆98Jul 1, 2026Updated 3 weeks ago
- a GFA toolkit☆13Oct 4, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 4 years ago
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated 3 months ago
- Rust utility code☆32Feb 9, 2024Updated 2 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- A Benchmark of Minimal Perfect Hash Function Algorithms.☆39Dec 20, 2022Updated 3 years ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 2 months ago
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated 2 weeks ago
- Rust bindings to minimap2 library☆113May 3, 2026Updated 2 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆42Jul 10, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Succinct Data Structures for Rust☆58Jun 8, 2025Updated last year
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆142Jun 23, 2024Updated 2 years ago
- C implementation of the Landau-Vishkin algorithm☆36Apr 8, 2022Updated 4 years ago
- Simple and transparent support for compressed files.☆81Updated this week
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- Out-of-memory sorting of large datasets map / reduce style processing☆48May 14, 2026Updated 2 months ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago