rob-p / FQFeederLinks
Self-contained, multi-threaded fasta/q parser
☆48Updated last year
Alternatives and similar repositories for FQFeeder
Users that are interested in FQFeeder are comparing it to the libraries listed below
Sorting:
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Efficient, parallel compression for terabyte-scale data☆48Updated last month
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- A repository for generating strobemers and evalaution☆79Updated last year
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 7 months ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆53Updated last year
- Building the compacted de Bruijn graph efficiently from references or reads.☆89Updated 5 months ago
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- Adaptive semi-global banded alignment on string graphs☆67Updated 7 years ago
- Bidirectional WFA (Paper)☆48Updated last year
- ☆16Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆55Updated 3 weeks ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆67Updated last year
- Pan-Genomic Matching Statistics☆53Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆55Updated last year
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 6 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- A versatile compressor of third generation sequencing reads.☆51Updated last year
- ☆14Updated 2 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 8 months ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆26Updated 6 months ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆68Updated 2 years ago