rob-p / FQFeederLinks
Self-contained, multi-threaded fasta/q parser
☆48Updated 2 weeks ago
Alternatives and similar repositories for FQFeeder
Users that are interested in FQFeeder are comparing it to the libraries listed below
Sorting:
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Efficient, parallel compression for terabyte-scale data☆56Updated 4 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆56Updated last year
- ☆16Updated 2 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆70Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 2 months ago
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- A repository for generating strobemers and evalaution☆79Updated last year
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 10 months ago
- Bidirectional WFA (Paper)☆48Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated last month
- Building the compacted de Bruijn graph efficiently from references or reads.☆92Updated this week
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- A hash map using the BooPHF perfect hash function☆13Updated 9 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Updated 6 years ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated last week
- ☆28Updated 9 months ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Substring index for paths in a graph☆60Updated last week
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- Pan-Genomic Matching Statistics☆55Updated last year
- Adaptive semi-global banded alignment on string graphs☆66Updated 7 years ago