Self-contained, multi-threaded fasta/q parser
☆50Mar 10, 2026Updated 4 months ago
Alternatives and similar repositories for FQFeeder
Users that are interested in FQFeeder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆24Apr 2, 2021Updated 5 years ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆57Mar 4, 2024Updated 2 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- ☆15Dec 8, 2022Updated 3 years ago
- DartMinHash: Fast Sketching for Weighted Sets☆12Dec 8, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- dynamic-updateable-index☆11Nov 10, 2015Updated 10 years ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆95Jul 15, 2026Updated last week
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 7 years ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆19Oct 26, 2025Updated 8 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆89Jan 25, 2024Updated 2 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- ☆18Jul 9, 2018Updated 8 years ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated 2 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 2 months ago
- De Bruijn graphs in Rust☆70Jul 22, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 8 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated 10 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 4 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- Bloom-filter based minimal perfect hash function library☆279Jul 16, 2025Updated last year
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 7 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- A Rust implementation of SSHash☆19Jul 2, 2026Updated 3 weeks ago
- An efficient index for the colored, compacted, de Bruijn graph☆112Jun 19, 2026Updated last month
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated last year
- An optimal space run-length Burrows-Wheeler transform full-text index☆27Oct 28, 2021Updated 4 years ago
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…☆24Jul 5, 2026Updated 2 weeks ago