jeff-k / bio-seq

Related projects ⓘ

Alternatives and complementary repositories for bio-seq

• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆66Updated 3 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated 8 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆26Updated 4 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 4 months ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆25Updated 5 months ago
• jguhlin / sfasta
  sfasta
  ☆34Updated 3 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆40Updated 3 weeks ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆41Updated this week
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆44Updated last month
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆34Updated 4 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆44Updated 3 months ago
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated last month
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 2 weeks ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆20Updated this week
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆51Updated 3 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆61Updated last month
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 7 months ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆14Updated 4 years ago
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆24Updated last week
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆76Updated this week
• wdecoster / kyber
  ☆18Updated this week
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆21Updated last week
• brentp / vcf-bench
  evaluating vcf parsing libraries
  ☆16Updated 2 years ago
• natir / rustyread
  A long read simulator based on badread idea
  ☆20Updated 2 years ago
• steineggerlab / unicore
  Universal and efficient core gene phylogeny with Foldseek and ProstT5
  ☆14Updated 2 months ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆34Updated last week
• pangenome / impg
  implicit pangenome graph
  ☆44Updated 2 weeks ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆35Updated 11 months ago