jeff-k / bio-seqLinks
Bit-packed and well-typed biological sequences
☆37Updated last month
Alternatives and similar repositories for bio-seq
Users that are interested in bio-seq are comparing it to the libraries listed below
Sorting:
- Iterate over minimizers of a DNA sequence☆31Updated last year
- A quality control tool for FASTQ files written in rust☆52Updated 6 months ago
- gia: Genomic Interval Arithmetic☆65Updated last year
- A FASTA/FASTQ format parser library☆20Updated last year
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Updated 2 years ago
- sfasta☆35Updated 8 months ago
- Bitpacked sequence trait and implementation☆16Updated last month
- Generate random test data for bioinformatics☆27Updated last year
- FASTA and FASTQ parsing in Rust☆81Updated 9 months ago
- bioinformatics toolkit in rust☆93Updated 3 months ago
- bedtools-like functionality for interval sets in rust☆55Updated 5 months ago
- Nail is an Alignment Inference tooL☆54Updated 3 weeks ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆39Updated 3 weeks ago
- k-mers and the like☆22Updated last week
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated 2 months ago
- Command line utility for working with next-generation sequencing files.☆37Updated 6 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated 4 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 4 months ago
- ☆21Updated last year
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- ntHash implementation in Rust☆36Updated last year
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Updated last year
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆23Updated last week
- Fast and exact gap-affine partial order alignment☆57Updated last month
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- Rust UMI Directional Adjacency Deduplicator☆15Updated 6 years ago
- Fasten toolkit, for streaming operations on fastq files☆81Updated 2 months ago
- Efficient and fast querying and parsing of GTDB's data☆29Updated 4 months ago