Bit-packed and well-typed biological sequences
☆46Jan 20, 2026Updated 2 months ago
Alternatives and similar repositories for bio-seq
Users that are interested in bio-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- Efficient querying of biological databases☆42Oct 27, 2025Updated 4 months ago
- k-mers and the like☆22Mar 2, 2026Updated 3 weeks ago
- De Bruijn graphs in Rust☆71Jul 22, 2024Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 2 months ago
- Mycobacterium tuberculosis complex lineage typing☆10Jun 22, 2025Updated 9 months ago
- FASTA and FASTQ parsing in Rust☆83Mar 14, 2025Updated last year
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆184Sep 19, 2024Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- Concurrency algorithms☆13Apr 7, 2025Updated 11 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- Remove human reads from a sequencing run☆48Mar 9, 2026Updated 2 weeks ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆362Jan 29, 2026Updated last month
- Overview of our data for microbial genomic benchmarking☆36Feb 5, 2026Updated last month
- A Rust library for parsing, writing and manipulating Genbank sequence files☆22Apr 20, 2025Updated 11 months ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆53Mar 15, 2026Updated last week
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- Rust bindings to minimap2 library☆109Mar 2, 2026Updated 3 weeks ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated 11 months ago
- An open-source, Web-based computer aided design (CAD) tool for synthetic biology built on the SBOL standard☆16Dec 22, 2022Updated 3 years ago
- ☆17Nov 19, 2025Updated 4 months ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Multiple Bacteria Genome Compressor (MBGC)☆11Feb 20, 2026Updated last month
- A pairwise sequence aligner written in Rust☆152Jan 27, 2026Updated last month
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Simple Python program to perform codon optimization or heterology calculations.☆11Apr 13, 2021Updated 4 years ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Jan 9, 2026Updated 2 months ago
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 5 months ago
- Compacted and colored de Bruijn graph construction and querying☆94Mar 6, 2026Updated 2 weeks ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 4 years ago
- Fast FASTX parsing and k-mer methods in Rust☆210Jan 27, 2026Updated last month
- a simple tool for listing conda environments with descriptions☆14Mar 28, 2025Updated 11 months ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 7 months ago
- Benchmarking programming languages/implementations for common tasks in Bioinformatics☆184Dec 9, 2021Updated 4 years ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆217Mar 13, 2026Updated last week
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- ☆11Dec 9, 2022Updated 3 years ago