Alternatives and similar repositories for bio-seq

Users that are interested in bio-seq are comparing it to the libraries listed below

• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• jguhlin / sfasta
  sfasta
  ☆35Updated 3 months ago
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆50Updated last month
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆31Updated last year
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated last year
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆35Updated last month
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆79Updated 4 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated 11 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆90Updated 2 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated this week
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆40Updated this week
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆11Updated last year
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated 3 months ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 9 months ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆101Updated 3 weeks ago
• hhandika / segul
  An ultrafast and memory efficient tool for phylogenomics
  ☆26Updated last week
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆29Updated 4 months ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆21Updated this week
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆50Updated this week
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆35Updated 6 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆53Updated 2 weeks ago
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆25Updated 11 months ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆71Updated last year
• oxli-bio / oxli
  k-mers and the like
  ☆22Updated this week
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆45Updated 10 months ago