jeff-k / bio-seq
Bit packed and well-typed biological sequences
☆26Updated this week
Alternatives and similar repositories for bio-seq:
Users that are interested in bio-seq are comparing it to the libraries listed below
- Iterate over minimizers of a DNA sequence☆27Updated 6 months ago
- bioinformatics toolkit in rust☆86Updated 8 months ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆30Updated last year
- A FASTA/FASTQ format parser library☆20Updated 10 months ago
- sfasta☆35Updated last month
- A quality control tool for FASTQ files written in rust☆42Updated 5 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 7 months ago
- Fast and exact gap-affine partial order alignment☆41Updated 2 months ago
- gia: Genomic Interval Arithmetic☆58Updated 5 months ago
- Generate random test data for bioinformatics☆25Updated 7 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆44Updated 4 months ago
- Fast interval intersection library☆35Updated this week
- Convert vcf in parquet☆24Updated last week
- Nail is an Alignment Inference tooL☆44Updated this week
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated 2 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Creating alignment plots from bam files☆56Updated this week
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆34Updated this week
- ☆11Updated 2 years ago
- Benchmarking pairwise aligners☆36Updated 10 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆24Updated 4 months ago
- Alignment-based gene expression quantification☆27Updated 8 months ago
- expressions on VCFs☆66Updated this week
- bedtools-like functionality for interval sets in rust☆49Updated 5 months ago
- A long read simulator based on badread idea☆20Updated 2 years ago
- Rust library for processing sequencing reads.☆21Updated 4 months ago
- Remove human reads from a sequencing run☆36Updated 3 months ago
- Fasten toolkit, for streaming operations on fastq files☆77Updated last week
- Command line utility for working with next-generation sequencing files.☆33Updated 2 months ago
- De Bruijn graphs in Rust☆65Updated 6 months ago