PtrHash minimal perfect hash function
☆100Jul 15, 2026Updated last week
Alternatives and similar repositories for PtrHash
Users that are interested in PtrHash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆15Apr 1, 2026Updated 3 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Jan 22, 2026Updated 6 months ago
- Rust implementations of succinct data structures☆73Updated this week
- kmer-counter based on kache-hash☆16Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated 2 weeks ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆45Jul 16, 2026Updated last week
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 8 months ago
- Fast approximate string searching☆159Jul 13, 2026Updated last week
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21May 31, 2026Updated last month
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated 3 weeks ago
- An ε-copy serialization/deserialization framework for Rust☆174Jul 10, 2026Updated 2 weeks ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated 2 weeks ago
- A (Minimal) Perfect Hash Function based on irregular cuckoo hashing, retrieval, and overloading.☆20Sep 30, 2025Updated 9 months ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- The fastest priority queue☆30Jul 7, 2026Updated 2 weeks ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- ☆24Apr 2, 2021Updated 5 years ago
- An extensible and performant aligner and read mapper☆99Updated this week
- ✈️ PTHash is a fast and compact minimal perfect hash function.☆262May 6, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆20Jun 23, 2025Updated last year
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆45Mar 9, 2026Updated 4 months ago
- Rust bindings to minimap2 library☆113May 3, 2026Updated 2 months ago
- Collection of succinct data structures in Rust☆104Updated this week
- ☆18Updated this week
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Compacted and colored de Bruijn graph construction and querying☆98Jul 1, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Mapping sequencing data to De Bruijn graphs, fast☆37Jul 10, 2026Updated 2 weeks ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆107May 6, 2026Updated 2 months ago
- A Rust implementation of SSHash☆19Jul 2, 2026Updated 3 weeks ago
- 2bit file format implementation in Rust☆16Mar 27, 2026Updated 3 months ago
- Implementation of a Backpack Quotient Filter☆13Jun 24, 2026Updated last month
- ☆17Apr 6, 2023Updated 3 years ago
- ☆15Nov 30, 2023Updated 2 years ago