This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.
☆20Oct 15, 2018Updated 7 years ago
Alternatives and similar repositories for 2018-python-rust
Users that are interested in 2018-python-rust are comparing it to the libraries listed below
Sorting:
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 5 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Manager for multi-container computing environments☆26Updated this week
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- Automatically build wheels for packages released on PyPI☆15Nov 25, 2019Updated 6 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Apr 19, 2020Updated 5 years ago
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 2 months ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Aug 9, 2019Updated 6 years ago
- A succinct colored dBG representation☆12Sep 11, 2018Updated 7 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Fast and memory-efficient clustering + coreset construction, including fast distance kernels for Bregman and f-divergences.☆34Sep 6, 2023Updated 2 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- ☆16Feb 5, 2026Updated 3 weeks ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Feb 4, 2026Updated 3 weeks ago
- De Bruijn graphs in Rust☆71Jul 22, 2024Updated last year
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated last month
- De Bruijn graph representation in low memory☆35Jul 6, 2024Updated last year
- ☆16Jan 21, 2024Updated 2 years ago
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- Rust wrapper for STAR aligner☆19Updated this week
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 5 years ago
- Self-contained, multi-threaded fasta/q parser☆48Jan 30, 2026Updated 3 weeks ago
- MicrobeDirectory 2.0☆22Aug 10, 2020Updated 5 years ago
- Rust wrapper of the BWA C API☆18May 23, 2025Updated 9 months ago
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆52Oct 17, 2023Updated 2 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Aug 31, 2017Updated 8 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- Rust bindings to minimap2 library☆109Updated this week
- BagMinHash - Minwise Hashing Algorithm for Weighted Sets☆26Aug 26, 2020Updated 5 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 2 years ago
- ☆24Apr 2, 2021Updated 4 years ago
- Fast FASTX parsing and k-mer methods in Rust☆210Jan 27, 2026Updated last month
- Quality of life improvements for Bioinformatics in Python.☆31Feb 17, 2026Updated last week
- Rust utility code☆32Feb 9, 2024Updated 2 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Oct 20, 2023Updated 2 years ago
- IPython notebooks with YAML file format☆32Jan 20, 2018Updated 8 years ago
- Efficiently read and write sequencing data from Python☆69Oct 12, 2025Updated 4 months ago