luizirber / 2018-python-rust
This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.
β20Updated 6 years ago
Alternatives and similar repositories for 2018-python-rust
Users that are interested in 2018-python-rust are comparing it to the libraries listed below
Sorting:
- β15Updated 4 years ago
- π― Generate DNA sequences with specified amino acid, codon, and k-mer frequenciesβ16Updated 2 years ago
- Minhash Index Extended to Knead Kmer Intersectionβ11Updated 5 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.β24Updated 4 years ago
- Rust in bioinformatics and computational biologyβ20Updated 2 years ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidenceβ17Updated 3 years ago
- Homebrew formulae for bioinformatics software only available for Linuxβ27Updated 5 years ago
- Flexible omics pipelineβ18Updated this week
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Pythonβ21Updated last year
- β18Updated 6 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)β15Updated 4 years ago
- Color DNA/RNA bases in terminal outputβ21Updated 7 years ago
- Universal K-mer Hitting Set library in Rustβ10Updated 4 years ago
- Bioinformatics Open Source Sequence machineβ33Updated last year
- Streaming sequence classification with web services βπβ19Updated 2 years ago
- PCA in rustβ13Updated last year
- Build sourmash databases for genbank.β12Updated 2 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they proviβ¦β14Updated 5 years ago
- β12Updated last year
- What's The Function of these genes?β22Updated 8 years ago
- The python binding for D4 formatβ16Updated 3 years ago
- A lightweight Python graphing API for genomic featuresβ15Updated 2 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomesβ11Updated 8 years ago
- β14Updated 9 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algebβ¦β23Updated 5 months ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.β11Updated 3 years ago
- β22Updated 5 months ago
- Augmented Interval Tree implemented in Cython/Cβ20Updated 3 months ago
- Rust UMI Directional Adjacency Deduplicatorβ15Updated 5 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQβ11Updated 7 years ago