Alternatives and similar repositories for rust-bwa

Users that are interested in rust-bwa are comparing it to the libraries listed below

• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆28Updated last year
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated last week
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆34Updated 8 months ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 3 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆55Updated 6 months ago
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 3 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆29Updated last year
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆32Updated 2 months ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆24Updated last week
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆62Updated last year
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆40Updated 2 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆35Updated 8 years ago
• vollgerlab / rustybam
  bioinformatics toolkit in rust
  ☆93Updated 4 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆66Updated last year
• natir / vcf2parquet
  Convert vcf in parquet
  ☆29Updated last year
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆31Updated 5 months ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆15Updated 6 years ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 3 months ago
• OceanGenomics / mudskipper
  A tool for projecting genomic alignments to transcriptomic coordinates
  ☆37Updated last year
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆40Updated last year
• fulcrumgenomics / guide-counter
  A better, faster way to count guides in CRISPR screens.
  ☆34Updated 10 months ago
• cdarby / samovar
  Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters
  ☆23Updated 6 years ago
• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 7 years ago
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆30Updated 7 years ago
• brentp / vcfexpress
  expressions on VCFs
  ☆91Updated 9 months ago
• GooglingTheCancerGenome / sv-channels
  Deep learning-based structural variant filtering method
  ☆39Updated 2 years ago
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆52Updated 7 months ago
• cschin / multi-tabix
  multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.
  ☆10Updated 4 years ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago