10XGenomics / rust-bwa
Rust wrapper of the BWA C API
☆18Updated 3 years ago
Alternatives and similar repositories for rust-bwa:
Users that are interested in rust-bwa are comparing it to the libraries listed below
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 8 months ago
- Fast FASTQ sample demultiplexing in Rust.☆58Updated last month
- bedtools-like functionality for interval sets in rust☆49Updated 4 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆32Updated last week
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated this week
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 6 months ago
- Fast interval intersection library☆34Updated last month
- drunk on perbase pileups and lua expressions☆17Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Quality of life improvements for Bioinformatics in Python.☆27Updated this week
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated last month
- GBWT-based handle graph☆31Updated this week
- A high-performance BigWig and BigBed library in Rust☆73Updated this week
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 6 years ago
- ☆21Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- BigWig manpulation tools using libBigWig and htslib☆28Updated 5 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 9 months ago
- gia: Genomic Interval Arithmetic☆58Updated 4 months ago
- a lexicographically-based GTF/GFF sorter☆29Updated 4 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Genome browser hub for the T2T genomes and resources☆17Updated 3 weeks ago
- A FASTA/FASTQ format parser library☆20Updated 10 months ago
- Fast sequencing data quality metrics☆17Updated 2 weeks ago
- bioinformatics toolkit in rust☆86Updated 8 months ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Updated 3 years ago