Alternatives and similar repositories for rust-bwa:

Users that are interested in rust-bwa are comparing it to the libraries listed below

• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆24Updated 9 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆30Updated last month
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆61Updated this week
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆17Updated last year
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• kcleal / superintervals
  Fast interval intersection library
  ☆35Updated 3 weeks ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last week
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆38Updated last year
• jguhlin / sfasta
  sfasta
  ☆35Updated last month
• jkbonfield / crumble
  Exploration of controlled loss of quality values for compressing CRAM files
  ☆34Updated last year
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆43Updated 2 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆49Updated 6 months ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆17Updated this week
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆34Updated 3 weeks ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆31Updated last week
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆27Updated this week
• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 6 years ago
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆27Updated 8 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 7 months ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated last week
• GooglingTheCancerGenome / sv-channels
  Deep learning-based structural variant filtering method
  ☆38Updated last year
• InscriptaLabs / BioCantor
  ☆21Updated last year
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆29Updated 2 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 6 months ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆35Updated 7 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆61Updated 6 months ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆22Updated 3 years ago