yunwilliamyu / hyperminhashLinks
LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash
☆56Updated 5 years ago
Alternatives and similar repositories for hyperminhash
Users that are interested in hyperminhash are comparing it to the libraries listed below
Sorting:
- ☆20Updated 5 years ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Updated 2 months ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated last year
- Fast approximation of similarity for sets of very different sizes☆20Updated 3 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- Implicit Interval Tree with Interpolation Index☆41Updated 3 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 4 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆83Updated last year
- DartMinHash: Fast Sketching for Weighted Sets☆12Updated 4 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12Updated 12 years ago
- ☆12Updated 6 years ago
- Practical Dynamic de Bruijn Graphs☆18Updated 5 years ago
- Code accompanying the publication for compressed graph annotation☆13Updated 6 years ago
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆30Updated 4 months ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆26Updated 3 years ago
- dynamic-updateable-index☆11Updated 9 years ago
- vector illustrations of BWT based searching on small strings☆16Updated 6 years ago
- ProbMinHash – A Class of Locality-Sensitive Hash Algorithms for the (Probability) Jaccard Similarity☆44Updated 4 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆34Updated 10 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆55Updated last year
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- Incremental construction of FM-index for DNA sequences☆72Updated last year
- ☆10Updated 3 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Fast and cache-efficient full-text pangenome index☆29Updated this week
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 8 months ago
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆38Updated last month