LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash
☆57Feb 19, 2020Updated 6 years ago
Alternatives and similar repositories for hyperminhash
Users that are interested in hyperminhash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jul 21, 2026Updated 2 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Sep 3, 2026Updated last month
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- Minimum plain text representation of kmer sets☆20Jan 30, 2025Updated last year
- A genomic minhashing implementation in Rust☆100Jul 8, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆18Jul 9, 2018Updated 8 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Updated this week
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆18Oct 26, 2025Updated 11 months ago
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 2 months ago
- Fast approximation of similarity for sets of very different sizes☆20Mar 8, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bloom filter implementation in Nimrod☆16May 26, 2023Updated 3 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Apr 19, 2020Updated 6 years ago
- ☆10Sep 28, 2026Updated 2 weeks ago
- Classify sequencing reads using MinHash.☆47Apr 6, 2020Updated 6 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 10 months ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Mar 12, 2024Updated 2 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Wavefront alignment algorithm (WFA) in Golang☆33Aug 21, 2026Updated last month
- De novo genome assembly and multisample variant calling☆113Mar 28, 2019Updated 7 years ago
- dynamic-updateable-index☆11Nov 10, 2015Updated 10 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- ☆22Jul 2, 2026Updated 3 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆75Apr 1, 2026Updated 6 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 7 months ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Aug 24, 2023Updated 3 years ago
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Jan 22, 2026Updated 8 months ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆141Jun 23, 2024Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated last year
- Scripts for implementing read until and other examples.☆31Feb 25, 2020Updated 6 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 13 years ago
- Bitpacked sequence trait and implementation☆19Oct 4, 2026Updated last week