Alternatives and similar repositories for fastq_set

Users that are interested in fastq_set are comparing it to the libraries listed below

• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆28Updated 3 weeks ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated 11 months ago
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆25Updated last month
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• nh13 / fqme
  ☆22Updated 8 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆32Updated 6 months ago
• BUStools / BUS-format
  BUS format specification
  ☆14Updated 5 years ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆18Updated last month
• Singular-Genomics / singular-demux
  Singular Genomics Demultiplexing Tool
  ☆16Updated last year
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 11 months ago
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆11Updated last year
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆27Updated last year
• COMBINE-lab / pufferfish2
  ☆15Updated last year
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆21Updated this week
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆15Updated 5 years ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆63Updated 2 months ago
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated 10 months ago
• sagc-bioinformatics / mgikit
  mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
  ☆14Updated 3 weeks ago
• kcleal / superintervals
  Fast interval intersection library
  ☆42Updated last week
• COMBINE-lab / terminus
  ☆58Updated 2 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆39Updated 2 years ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• wdecoster / kyber
  ☆21Updated 7 months ago
• 38 / pyd4
  The python binding for D4 format
  ☆16Updated 3 years ago
• Ebedthan / sabreur
  fast, reliable and handy demultiplexing tool for fastx files
  ☆14Updated last week
• cdarby / samovar
  Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters
  ☆24Updated 6 years ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆29Updated 4 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 2 months ago
• ArcInstitute / mmr
  A minimap2 implementation with binseq inputs
  ☆15Updated last week