10XGenomics / fastq_set
Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
☆13Updated 5 months ago
Alternatives and similar repositories for fastq_set:
Users that are interested in fastq_set are comparing it to the libraries listed below
- ☆22Updated 5 months ago
- Rust wrapper for the next generation (still currently in C++)☆25Updated 3 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated 3 months ago
- Single-cell analysis methods in Rust☆22Updated 5 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- gia: Genomic Interval Arithmetic☆62Updated 8 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Rust UMI Directional Adjacency Deduplicator☆15Updated 5 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Updated 8 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆19Updated last week
- drunk on perbase pileups and lua expressions☆18Updated this week
- Container class to represent genomic locations and support genomic analysis☆21Updated last week
- bedtools-like functionality for interval sets in rust☆51Updated 8 months ago
- Toolkit for manipulating FASTA and SAM files☆18Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 10 months ago
- ☆15Updated last year
- BUS format specification☆14Updated 5 years ago
- ☆17Updated 3 months ago
- An efficient CLI to extract sequences from the SRA☆60Updated this week
- Singular Genomics Demultiplexing Tool☆16Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 7 months ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆13Updated last week
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Fast FASTQ sample demultiplexing in Rust.☆62Updated 3 weeks ago
- a lexicographically-based GTF/GFF sorter☆34Updated last week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last week
- Alignment-based gene expression quantification☆27Updated last month
- The python binding for D4 format☆16Updated 3 years ago