Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
☆12Dec 6, 2024Updated last year
Alternatives and similar repositories for fastq_set
Users that are interested in fastq_set are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rust wrapper for STAR aligner☆19Mar 16, 2026Updated last week
- Single-cell analysis methods in Rust☆30Nov 4, 2025Updated 4 months ago
- Single-Cell RNA-seq pseudo-aligner☆52May 6, 2024Updated last year
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆201Mar 17, 2026Updated last week
- A julia based machine learning package for boosting any loss, activation and constraint.☆10Jun 27, 2019Updated 6 years ago
- Mapping sequencing data to De Bruijn graphs, fast☆32Updated this week
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆49Mar 10, 2026Updated last week
- ☆21Dec 26, 2025Updated 2 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated last year
- Build sourmash databases for genbank.☆11May 4, 2023Updated 2 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Aug 9, 2019Updated 6 years ago
- Go implementation of ntHash☆20Sep 16, 2021Updated 4 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 3 months ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Bidirectional WFA (Paper)☆49May 20, 2024Updated last year
- Just another minhash implementation.☆12Mar 12, 2026Updated last week
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆11Jan 26, 2022Updated 4 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- ☆17Jan 5, 2021Updated 5 years ago
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.☆20Oct 15, 2018Updated 7 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 6 years ago
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- Rust utility code☆32Feb 9, 2024Updated 2 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- ☆19Updated this week
- Per-base per-nucleotide depth analysis☆149Mar 16, 2026Updated last week
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- A Rust library for building modular, fast and compact indexes over genomic data☆12Nov 22, 2023Updated 2 years ago
- ☆23Jan 20, 2021Updated 5 years ago
- GBZ file format for pangenome graphs☆46Updated this week
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- Freelance bioinformaticians directory☆10Feb 10, 2023Updated 3 years ago
- ☆57Aug 11, 2022Updated 3 years ago
- De Bruijn graphs in Rust☆71Jul 22, 2024Updated last year