10XGenomics / fastq_setLinks
Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
☆12Updated 10 months ago
Alternatives and similar repositories for fastq_set
Users that are interested in fastq_set are comparing it to the libraries listed below
Sorting:
- Rust wrapper for the next generation (still currently in C++)☆28Updated 3 months ago
- ☆21Updated 10 months ago
- Single-cell analysis methods in Rust☆27Updated 4 months ago
- gia: Genomic Interval Arithmetic☆64Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- bedtools-like functionality for interval sets in rust☆54Updated 2 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 9 months ago
- BUS format specification☆13Updated 5 years ago
- Rust UMI Directional Adjacency Deduplicator☆14Updated 5 years ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated 2 weeks ago
- The python binding for D4 format☆16Updated 4 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated last week
- Singular Genomics Demultiplexing Tool☆16Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- ☆15Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- ☆57Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 6 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Alignment-based gene expression quantification☆28Updated 2 months ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- Fast interval intersection library☆43Updated 2 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Updated 2 years ago
- Python language bindings for bwa☆11Updated last month
- A better, faster way to count guides in CRISPR screens.☆33Updated 6 months ago