Alternatives and similar repositories for cobs

Users that are interested in cobs are comparing it to the libraries listed below

• jermp / sshash
  📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.
  ☆89Updated this week
• splatlab / mantis
  Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
  ☆82Updated last year
• nicolaprezza / r-index
  An optimal space run-length Burrows-Wheeler transform full-text index
  ☆66Updated 2 years ago
• jermp / lphash
  Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
  ☆43Updated last year
• jltsiren / bwt-merge
  A tool for merging large BWTs
  ☆26Updated 4 years ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated last year
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆42Updated 7 months ago
• GuillaumeHolley / BloomFilterTrie
  An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.
  ☆44Updated 3 years ago
• jts / dbgfm
  FM-index representation of a de Bruijn graph
  ☆27Updated 8 years ago
• mohsenzakeri / Movi
  Fast and cache-efficient full-text pangenome index
  ☆29Updated last month
• vicLeva / bqf
  Implementation of a Backpack Quotient Filter
  ☆12Updated 2 months ago
• dominikkempa / faster-minuter
  Wavelet tree based on a fixed block boosting technique
  ☆16Updated 4 years ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆10Updated 4 years ago
• RUSH-LAB / RAMBO
  ☆20Updated 5 years ago
• mlin / iitii
  Implicit Interval Tree with Interpolation Index
  ☆41Updated 3 years ago
• muellan / metacache
  memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
  ☆64Updated 3 months ago
• csirac / dynamicDBG
  Practical Dynamic de Bruijn Graphs
  ☆18Updated 4 years ago
• gmarcais / compact_vector
  Bit packed vector of integral values
  ☆27Updated 7 months ago
• mpetri / FM-Index
  FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…
  ☆107Updated 10 years ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• tlemane / kmtricks
  modular k-mer count matrix and Bloom filter construction for large read collections
  ☆85Updated 2 weeks ago
• dnbaker / sketch
  C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings
  ☆155Updated last year
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 6 months ago
• cartoonist / kseqpp
  Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
  ☆51Updated last year
• nicolaprezza / BWTIL
  BWT Text Indexing Library: a set of tools to work with BWT-based text indexes
  ☆25Updated 3 years ago
• jltsiren / gcsa2
  BWT-based index for graphs
  ☆72Updated 6 months ago
• nh13 / pbgzip
  Parallel Block GZIP
  ☆50Updated 9 years ago
• medvedevgroup / UST
  ☆24Updated 4 years ago
• torognes / swipe
  Smith-Waterman database searches with inter-sequence SIMD parallelisation
  ☆60Updated last year
• Malfoy / Miekki
  Minhash Index Extended to Knead Kmer Intersection
  ☆11Updated 5 years ago