10XGenomics / rust-pseudoaligner
Single-Cell RNA-seq pseudo-aligner
☆51Updated 9 months ago
Alternatives and similar repositories for rust-pseudoaligner:
Users that are interested in rust-pseudoaligner are comparing it to the libraries listed below
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 8 months ago
- bioinformatics toolkit in rust☆86Updated 9 months ago
- gia: Genomic Interval Arithmetic☆61Updated 6 months ago
- Fasten toolkit, for streaming operations on fastq files☆78Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆61Updated this week
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆43Updated 2 years ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆43Updated this week
- Long-read splice alignment with high accuracy☆62Updated 5 months ago
- Bidirectional WFA (Paper)☆44Updated 9 months ago
- A better, faster way to count guides in CRISPR screens.☆31Updated last month
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆69Updated this week
- Rust wrapper of the BWA C API☆18Updated 3 years ago
- long read RNA-seq quantification☆74Updated 3 weeks ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆43Updated 2 months ago
- De Bruijn graphs in Rust☆66Updated 7 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆47Updated this week
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 5 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆58Updated 3 months ago
- Version II of Mandalorion☆32Updated 6 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated last month
- Bioinformatics Open Source Sequence machine☆33Updated last year
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- Single-cell analysis methods in Rust☆20Updated 3 months ago
- Toolkit for manipulating FASTA and SAM files☆17Updated 11 months ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆35Updated 9 months ago
- Annotating principal splice isoforms☆14Updated 4 months ago
- DMR Identification Tool☆34Updated last year
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 2 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago