Alternatives and similar repositories for rust-pseudoaligner:

Users that are interested in rust-pseudoaligner are comparing it to the libraries listed below

• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 7 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆86Updated 8 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆77Updated last week
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆58Updated 5 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆58Updated last month
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆42Updated this week
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆65Updated 6 months ago
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆73Updated last week
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 2 years ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆42Updated 2 weeks ago
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆60Updated 4 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆49Updated 5 months ago
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆44Updated 8 months ago
• rvolden / C3POa
  Computational pipeline for calling consensi on R2C2 nanopore data
  ☆31Updated 2 years ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆74Updated this week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆73Updated last week
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 3 years ago
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆72Updated 4 months ago
• Daniel-Liu-c0deb0t / UMICollapse
  Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalabilit…
  ☆70Updated 9 months ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated 8 months ago
• mritchielab / FLAMES
  A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
  ☆26Updated 3 weeks ago
• OceanGenomics / mudskipper
  A tool for projecting genomic alignments to transcriptomic coordinates
  ☆35Updated 8 months ago
• raphael-group / hatchet
  HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…
  ☆69Updated this week
• fulcrumgenomics / guide-counter
  A better, faster way to count guides in CRISPR screens.
  ☆31Updated last month
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆20Updated 2 months ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆17Updated 10 months ago
• cschin / peregrine-2021
  ☆58Updated last year
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated last month
• 10XGenomics / rust-bwa
  Rust wrapper of the BWA C API
  ☆18Updated 3 years ago
• HKU-BAL / ClairS-TO
  ClairS-TO - a deep-learning method for tumor-only somatic variant calling
  ☆58Updated last month