Single-Cell RNA-seq pseudo-aligner
☆52May 6, 2024Updated last year
Alternatives and similar repositories for rust-pseudoaligner
Users that are interested in rust-pseudoaligner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rust utility code☆32Feb 9, 2024Updated 2 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- De Bruijn graphs in Rust☆71Jul 22, 2024Updated last year
- Rust wrapper for STAR aligner☆20Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 4 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆91Feb 26, 2026Updated last month
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated last year
- Rust bindings to minimap2 library☆110Mar 30, 2026Updated 2 weeks ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆62Mar 25, 2026Updated 3 weeks ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Compacted and colored de Bruijn graph construction and querying☆95Mar 6, 2026Updated last month
- ☆21Dec 26, 2025Updated 3 months ago
- A pairwise sequence aligner written in Rust☆153Jan 27, 2026Updated 2 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 10 months ago
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆139Jun 23, 2024Updated last year
- Hardware go brrr bounded context suffix array construction algorithm☆19Nov 1, 2023Updated 2 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A very fast interval tree data structure☆131Feb 3, 2025Updated last year
- Just another minhash implementation.☆12Mar 12, 2026Updated last month
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 7 years ago
- Simple and transparent support for compressed files.☆81Feb 27, 2026Updated last month
- Fast and scalable minimal perfect hashing for massive key sets☆150Jul 8, 2024Updated last year
- ☆52Sep 20, 2022Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- A command line utilty for working with BINSEQ files☆36Mar 31, 2026Updated 2 weeks ago
- Alignment-based gene expression quantification☆37Feb 8, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆184Sep 19, 2024Updated last year
- ☆22Jul 28, 2022Updated 3 years ago
- Convert 10x BAM files to the original FASTQs compatible with 10x pipelines☆67Feb 10, 2026Updated 2 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 3 months ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Dec 30, 2020Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year