Alternatives and similar repositories for block-aligner

Users that are interested in block-aligner are comparing it to the libraries listed below

• RagnarGrootKoerkamp / astar-pairwise-aligner
  A pairwise sequence aligner written in Rust
  ☆137Updated last month
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆56Updated 2 weeks ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆79Updated 5 months ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆71Updated last year
• jeffdaily / parasail-python
  Python bindings for the parasail C library.
  ☆106Updated 11 months ago
• COMBINE-lab / pufferfish
  An efficient index for the colored, compacted, de Bruijn graph
  ☆110Updated 10 months ago
• Martinsos / opal
  SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
  ☆39Updated last year
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆196Updated last month
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated 4 months ago
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆47Updated last year
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆84Updated this week
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆69Updated 2 months ago
• jakobnissen / alen
  Simple terminal alignment viewer
  ☆84Updated last month
• COMBINE-lab / cuttlefish
  Building the compacted de Bruijn graph efficiently from references or reads.
  ☆89Updated 4 months ago
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆137Updated 6 months ago
• Edinburgh-Genome-Foundry / python_codon_tables
  Codon usage tables in code-friendly format + Python bindings
  ☆38Updated 3 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆90Updated 2 months ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆51Updated 2 weeks ago
• lh3 / ropebwt3
  BWT construction and search
  ☆116Updated last month
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 9 months ago
• ratschlab / metagraph
  Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
  ☆124Updated this week
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆166Updated 4 months ago
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆168Updated 9 months ago
• RagnarGrootKoerkamp / oxford-bioinformatics-template
  Improved version of the Oxford Bioinformatics paper template
  ☆14Updated 11 months ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆70Updated this week
• TianyiShi2001 / bioinformatics-algorithms-rs
  Bioinformatics Algorithms implemented in Rust for Learners
  ☆32Updated 4 years ago