Daniel-Liu-c0deb0t / block-alignerLinks
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
☆137Updated last year
Alternatives and similar repositories for block-aligner
Users that are interested in block-aligner are comparing it to the libraries listed below
Sorting:
- A pairwise sequence aligner written in Rust☆144Updated 2 months ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆61Updated 3 weeks ago
- Python bindings for the parasail C library.☆114Updated last year
- FASTA and FASTQ parsing in Rust☆80Updated 9 months ago
- De Bruijn graphs in Rust☆72Updated last year
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆39Updated last year
- An efficient index for the colored, compacted, de Bruijn graph☆110Updated last year
- Compacted and colored de Bruijn graph construction and querying☆91Updated 3 weeks ago
- A high efficiency binary format for sequencing data☆84Updated last week
- Simple terminal alignment viewer☆85Updated 5 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Fasten toolkit, for streaming operations on fastq files☆81Updated 2 months ago
- ☆50Updated 3 years ago
- Fast FASTX parsing and k-mer methods in Rust☆203Updated 2 weeks ago
- Assembled Genomes Compressor☆175Updated last year
- bioinformatics toolkit in rust☆93Updated 3 months ago
- A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes☆75Updated last year
- Nail is an Alignment Inference tooL☆54Updated 3 weeks ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Single-Cell RNA-seq pseudo-aligner☆52Updated last year
- Bidirectional WFA (Paper)☆48Updated last year
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated last year
- A fast multiple sequence alignment program.☆150Updated 5 months ago
- Bioinformatics Algorithms implemented in Rust for Learners☆31Updated 4 years ago
- ☆133Updated last year
- ☆15Updated 2 years ago
- The D4 Quantitative Data Format☆169Updated last month
- Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly☆215Updated this week
- ntHash implementation in Rust☆36Updated last year
- Improved version of the Oxford Bioinformatics paper template☆15Updated last year