Daniel-Liu-c0deb0t / block-aligner
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
☆132Updated 8 months ago
Alternatives and similar repositories for block-aligner:
Users that are interested in block-aligner are comparing it to the libraries listed below
- A pairwise sequence aligner written in Rust☆129Updated this week
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆43Updated this week
- Python bindings for the parasail C library.☆97Updated 6 months ago
- De Bruijn graphs in Rust☆66Updated 7 months ago
- FASTA and FASTQ parsing in Rust☆75Updated last month
- Simple terminal alignment viewer☆81Updated last week
- Compacted and colored de Bruijn graph construction and querying☆82Updated last month
- Bidirectional WFA (Paper)☆45Updated 9 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆107Updated 5 months ago
- Logan Unitigs and Contigs☆123Updated last week
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 8 months ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated 10 months ago
- ntHash implementation in Rust☆35Updated 7 months ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆176Updated 5 months ago
- Protein structure alignment and search algorithm☆56Updated this week
- ☆125Updated 6 months ago
- BWT construction and search☆111Updated this week
- Assembled Genomes Compressor☆159Updated 3 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆105Updated 4 months ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆128Updated 3 weeks ago
- A console-based alignment viewer☆107Updated 3 weeks ago
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated 9 months ago
- Fasten toolkit, for streaming operations on fastq files☆78Updated last month
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆118Updated 4 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆184Updated this week
- nucleic acid folding☆90Updated 7 months ago
- The D4 Quantitative Data Format☆161Updated 3 weeks ago
- Very fast ONT basecaller☆53Updated 2 years ago
- sensitive and precise assembly of short sequencing reads☆152Updated 4 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆130Updated 3 weeks ago