Alternatives and similar repositories for seqNMF

Users that are interested in seqNMF are comparing it to the libraries listed below

• pillowlab / neuroGLM
  Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
  ☆71Updated 5 years ago
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆47Updated 6 years ago
• pillowlab / GLMspiketraintutorial
  Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data
  ☆96Updated 3 years ago
• pillowlab / GLMspiketools
  Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
  ☆43Updated 6 years ago
• ikinsella / locaNMF
  Pytorch implementation of LocaNMF
  ☆36Updated 5 years ago
• KordingLab / spykes
  Tools for spike data analysis and visualization
  ☆108Updated 2 years ago
• zivlab / island
  Revealing neural correlates of behavior without behavioral measurements
  ☆15Updated 5 years ago
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆122Updated last year
• zashwood / glm-hmm
  Code to reproduce figures for "Mice alternate between discrete strategies during perceptual decision-making" from Ashwood, Roy, Stone, IB…
  ☆51Updated 2 years ago
• nicholas-roy / psytrack
  ☆56Updated 7 months ago
• pillowlab / GLMspiketraintutorial_python
  ☆59Updated 3 years ago
• nsteinme / steinmetz-et-al-2019
  Code accompanying Steinmetz et al., 2019
  ☆60Updated 4 years ago
• Eden-Kramer-Lab / replay_trajectory_classification
  State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data
  ☆50Updated last month
• murthylab / GLMHMM
  ☆24Updated 5 years ago
• cortex-lab / sortingQuality
  Functions to assess quality of spike sorting results
  ☆34Updated 2 years ago
• MouseLand / rastermap
  a visualization method for neural data
  ☆238Updated 6 months ago
• nelpy / nelpy
  Neuroelectrophysiology object model and data analysis in Python.
  ☆50Updated 2 months ago
• buzsakilab / buzcode
  Code for internal lab sharing - polishing has started but is by no means complete
  ☆130Updated last year
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆135Updated 3 months ago
• lfads / lfads-run-manager
  Matlab interface for Latent Factor Analysis via Dynamical Systems (LFADS)
  ☆50Updated 3 years ago
• arthur-pe / slicetca
  Library to perform Slice Tensor Component Analysis (sliceTCA)
  ☆55Updated 7 months ago
• paninski-lab / yass
  YASS: Yet Another Spike Sorter
  ☆70Updated 3 years ago
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆147Updated last year
• machenslab / dPCA
  An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)
  ☆309Updated 3 years ago
• flatironinstitute / nemos
  NEural MOdelS, a statistical modeling framework for neuroscience.
  ☆107Updated this week
• SpikeInterface / MEArec
  Fast and customizable of extracellular recordings on MEA
  ☆45Updated 4 months ago
• PeyracheLab / Tutorial_HDPlaceCells_Analysis
  A course given at the 2017 Canadian Neuroscience meeting, Neural Signal Analysis Satellite.
  ☆15Updated 7 years ago
• cortex-lab / KiloSort
  GPU code for spike sorting
  ☆189Updated last year
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated 2 years ago
• open-ephys / analysis-tools
  Archived code for reading data saved by the Open Ephys GUI
  ☆60Updated 2 years ago