Alternatives and similar repositories for seqNMF

Users that are interested in seqNMF are comparing it to the libraries listed below

• pillowlab / neuroGLM
  Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
  ☆71Updated 5 years ago
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆46Updated 6 years ago
• ikinsella / locaNMF
  Pytorch implementation of LocaNMF
  ☆36Updated 5 years ago
• pillowlab / GLMspiketraintutorial
  Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data
  ☆97Updated 3 years ago
• pillowlab / GLMspiketools
  Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
  ☆43Updated 6 years ago
• machenslab / dPCA
  An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)
  ☆312Updated 3 years ago
• lfads / lfads-run-manager
  Matlab interface for Latent Factor Analysis via Dynamical Systems (LFADS)
  ☆50Updated 3 years ago
• KordingLab / spykes
  Tools for spike data analysis and visualization
  ☆109Updated 2 years ago
• zashwood / glm-hmm
  Code to reproduce figures for "Mice alternate between discrete strategies during perceptual decision-making" from Ashwood, Roy, Stone, IB…
  ☆53Updated 2 years ago
• catniplab / NPGLM
  non-parametric inference for convolutional filters in poisson glms
  ☆13Updated 4 years ago
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆122Updated last year
• paninski-lab / yass
  YASS: Yet Another Spike Sorter
  ☆70Updated 3 years ago
• murthylab / GLMHMM
  ☆24Updated 5 years ago
• nicholas-roy / psytrack
  ☆56Updated 8 months ago
• pillowlab / GLMspiketraintutorial_python
  ☆60Updated 3 years ago
• cortex-lab / sortingQuality
  Functions to assess quality of spike sorting results
  ☆34Updated 2 years ago
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆147Updated last year
• nsteinme / steinmetz-et-al-2019
  Code accompanying Steinmetz et al., 2019
  ☆60Updated 4 years ago
• cortex-lab / KiloSort
  GPU code for spike sorting
  ☆189Updated last year
• Eden-Kramer-Lab / replay_trajectory_classification
  State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data
  ☆51Updated last month
• NeurodataWithoutBorders / matnwb
  A Matlab interface for reading and writing NWB files
  ☆55Updated last week
• arthur-pe / slicetca
  Library to perform Slice Tensor Component Analysis (sliceTCA)
  ☆57Updated 8 months ago
• zivlab / island
  Revealing neural correlates of behavior without behavioral measurements
  ☆15Updated 6 years ago
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆101Updated 9 months ago
• churchlandlab / ChronicNeuropixels
  Neuropixels case for chronic recordings in freely moving mice.
  ☆19Updated 5 years ago
• nelpy / nelpy
  Neuroelectrophysiology object model and data analysis in Python.
  ☆50Updated 3 months ago
• flatironinstitute / mountainlab-js
  MountainLab is data processing, sharing and visualization software for scientists. It is built around MountainSort, spike sorting softwar…
  ☆45Updated 6 years ago
• buzsakilab / buzcode
  Code for internal lab sharing - polishing has started but is by no means complete
  ☆130Updated last year
• mackelab / CorBinian
  CorBinian: A toolbox for modelling and simulating high-dimensional binary and count-data with correlations
  ☆19Updated 4 years ago
• spyking-circus / spyking-circus
  Fast and scalable spike sorting in python
  ☆95Updated 3 months ago