Aharoni-Lab / Miniscope-DAQ-QT-Software

Related projects ⓘ

Alternatives and complementary repositories for Miniscope-DAQ-QT-Software

• zivlab / CellReg
  Registration of cells across sessions.
  ☆69Updated 2 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆91Updated 3 months ago
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆29Updated last month
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆25Updated this week
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆59Updated 4 months ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆67Updated last month
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆82Updated 3 months ago
• leomol / FPA
  Fiber photometry analysis
  ☆19Updated 2 weeks ago
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆83Updated 3 weeks ago
• jenniferColonell / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆54Updated last week
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆96Updated 2 weeks ago
• cortex-lab / spikes
  cortex lab code for electrophysiology
  ☆74Updated 9 months ago
• open-ephys / Bonsai.Miniscope
  Bonsai package for controlling headborne, calcium imaging miniscopes
  ☆12Updated 8 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated 11 months ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆64Updated this week
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆34Updated 3 years ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆124Updated 8 months ago
• Aharoni-Lab / Miniscope-v4
  All things Miniscope v4
  ☆132Updated last year
• denisecailab / ezTrack
  Free, platform independent, behavior tracking software.
  ☆121Updated 4 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆44Updated last year
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆44Updated this week
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆23Updated 5 years ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆122Updated last week
• petersaj / AP_histology
  Histology processing
  ☆64Updated 7 months ago
• talialerner / Photometry-Analysis-Shared
  ☆11Updated 8 years ago
• djoshea / neuropixel-utils
  Utilities for managing Neuropixel datasets and Kilosort results
  ☆45Updated last year
• Coen-Lab / chronic-neuropixels
  CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation
  ☆17Updated this week
• Julie-Fabre / awesome_neuropixels
  A curated list of awesome Neuropixels resources.
  ☆75Updated 2 weeks ago
• cortex-lab / widefield
  Image processing and tools for widefield imaging
  ☆18Updated 4 years ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆50Updated 3 months ago