neuroethology / bentoMATLinks
A gui for browsing joint calcium imaging + behavioral data.
☆54Updated 10 months ago
Alternatives and similar repositories for bentoMAT
Users that are interested in bentoMAT are comparing it to the libraries listed below
Sorting:
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆78Updated 7 months ago
- Registration of cells across sessions.☆75Updated last year
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated this week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆179Updated 3 months ago
- ☆52Updated last year
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆138Updated 4 months ago
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆71Updated 3 weeks ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆15Updated 8 months ago
- Histology processing☆71Updated 2 months ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆63Updated 5 months ago
- ☆97Updated 3 weeks ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆195Updated last year
- pyqt5 dependent applications for IBL sessions☆31Updated last month
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆52Updated 5 months ago
- NEural MOdelS, a statistical modeling framework for neuroscience.☆111Updated this week
- Collection of probe description for probeinterface☆17Updated last week
- A curated list of awesome Neuropixels resources.☆118Updated 3 weeks ago
- Fiber Photometry Modular Analysis Tool Suite☆41Updated 4 years ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆61Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆81Updated 11 months ago
- a visualization method for neural data☆238Updated 7 months ago
- pynapple collaborative data analysis (high level python scripts)☆37Updated last year
- Tools to work with Allen Inst CCF data in matlab☆142Updated 4 months ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆110Updated last month
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆40Updated 3 weeks ago
- Region Of Interest Classification and Tracking☆27Updated this week