neuroethology / bentoMATLinks
A gui for browsing joint calcium imaging + behavioral data.
☆54Updated 10 months ago
Alternatives and similar repositories for bentoMAT
Users that are interested in bentoMAT are comparing it to the libraries listed below
Sorting:
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Registration of cells across sessions.☆75Updated last year
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 7 months ago
- Histology processing☆71Updated 3 months ago
- ☆52Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 4 months ago
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆72Updated last month
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆157Updated 3 weeks ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆138Updated 5 months ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆61Updated 2 years ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated 3 weeks ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆63Updated last year
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆15Updated 9 months ago
- Fiber photometry analysis☆22Updated last week
- a visualization method for neural data☆239Updated 8 months ago
- ☆100Updated last month
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆197Updated last year
- pyqt5 dependent applications for IBL sessions☆31Updated 2 months ago
- A curated list of awesome Neuropixels resources.☆120Updated 3 weeks ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆52Updated 6 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- An active learning platform for expert-guided, data efficient discovery of behavior.☆64Updated 6 months ago
- SpikeGLX postprocessing [tshift filter CAR fix join extract]☆12Updated last month
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆40Updated 2 weeks ago
- Tools to work with Allen Inst CCF data in matlab☆143Updated 4 months ago
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆28Updated this week
- NEural MOdelS, a statistical modeling framework for neuroscience.☆111Updated last week
- Free, platform independent, behavior tracking software.☆143Updated 5 months ago