neuroethology / bentoMATLinks
A gui for browsing joint calcium imaging + behavioral data.
☆54Updated 11 months ago
Alternatives and similar repositories for bentoMAT
Users that are interested in bentoMAT are comparing it to the libraries listed below
Sorting:
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Registration of cells across sessions.☆75Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 5 months ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆15Updated 10 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 2 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 2 weeks ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Updated 9 months ago
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- ☆52Updated last year
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated 2 weeks ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆53Updated 7 months ago
- Histology processing☆72Updated last month
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆73Updated this week
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆139Updated last month
- ☆101Updated 2 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆64Updated last year
- An active learning platform for expert-guided, data efficient discovery of behavior.☆66Updated 7 months ago
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆198Updated last year
- pyqt5 dependent applications for IBL sessions☆32Updated 3 months ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆61Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Tools to work with Allen Inst CCF data in matlab☆143Updated 6 months ago
- a visualization method for neural data☆241Updated 9 months ago
- A curated list of awesome Neuropixels resources.☆122Updated last month
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Open-source stereotaxic coordinator☆15Updated 3 years ago
- Fiber photometry analysis☆22Updated last month
- Region Of Interest Classification and Tracking☆27Updated last week
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- ☆117Updated 5 months ago