Alternatives and similar repositories for CaImDecoding:

Users that are interested in CaImDecoding are comparing it to the libraries listed below

• PeyracheLab / Tutorial_HDPlaceCells_Analysis
  A course given at the 2017 Canadian Neuroscience meeting, Neural Signal Analysis Satellite.
  ☆14Updated 6 years ago
• PeyracheLab / pynacollada
  pynapple collaborative data analysis (high level python scripts)
  ☆37Updated last year
• buzsakilab / 3d_print_designs
  ☆15Updated 10 months ago
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆65Updated 3 months ago
• EnnyvanBeest / UnitMatch
  Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days
  ☆56Updated last month
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆26Updated 2 weeks ago
• JorritMontijn / zetapy
  Python code implementing the ZETA-test
  ☆26Updated this week
• ayalab1 / neurocode
  Code for neural and behavioral data analysis from the Brain Computation and Behavior Lab, aka AyA Lab, at Cornell University.
  ☆17Updated last week
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆45Updated 5 years ago
• int-brain-lab / ONE
  Open Neurophysiology Environment
  ☆18Updated 3 weeks ago
• pillowlab / neuroGLM
  Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
  ☆68Updated 4 years ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆73Updated 6 months ago
• jenniferColonell / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆59Updated 3 weeks ago
• cortex-lab / spikes
  cortex lab code for electrophysiology
  ☆80Updated last year
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated last year
• nsteinme / steinmetz-et-al-2019
  Code accompanying Steinmetz et al., 2019
  ☆59Updated 3 years ago
• NeuroNetMem / neuroseries
  ☆13Updated 5 years ago
• zashwood / glm-hmm
  Code to reproduce figures for "Mice alternate between discrete strategies during perceptual decision-making" from Ashwood, Roy, Stone, IB…
  ☆43Updated last year
• michael-zugaro / FMAToolbox
  The Freely Moving Animal (FMA) Toolbox is a Matlab toolbox. Its purpose is to help analyze electrophysiological and behavioral data recor…
  ☆12Updated 3 years ago
• open-ephys / open-ephys-matlab-tools
  Matlab code for interacting with the Open Ephys GUI
  ☆14Updated 6 months ago
• murthylab / GLMHMM
  ☆22Updated 5 years ago
• gloewing / photometry_FLMM
  Code for Functional Mixed Models for Fiber Photometry
  ☆10Updated last week
• GiocomoLab / ln-model-of-mec-neurons
  Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and thet…
  ☆23Updated 2 years ago
• Coen-Lab / chronic-neuropixels
  CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation
  ☆21Updated last month
• Julie-Fabre / awesome_neuropixels
  A curated list of awesome Neuropixels resources.
  ☆94Updated last month
• Eden-Kramer-Lab / ripple_detection
  Tools for identifying sharp wave ripple events using LFPs
  ☆36Updated 5 months ago
• NeuroNetMem / PowerPixelsPipeline
  ☆14Updated last month
• nelpy / nelpy
  Neuroelectrophysiology object model and data analysis in Python.
  ☆51Updated 2 weeks ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆51Updated 2 months ago
• djoshea / neuropixel-utils
  Utilities for managing Neuropixel datasets and Kilosort results
  ☆46Updated last year