Alternatives and similar repositories for pbsim3

Users that are interested in pbsim3 are comparing it to the libraries listed below

• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆117Updated this week
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 5 months ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆85Updated 4 months ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆110Updated last week
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆129Updated 2 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆117Updated last month
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆7Updated 4 months ago
• paoloshasta / shasta
  De novo assembly from Oxford Nanopore reads.
  ☆83Updated 3 weeks ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 2 months ago
• yukiteruono / pbsim2
  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
  ☆72Updated last year
• kjenike / panagram
  ☆62Updated last week
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆97Updated last week
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆104Updated 9 months ago
• daewoooo / SVbyEye
  ☆116Updated last month
• EichlerLab / pav
  Phased assembly variant caller
  ☆119Updated 6 months ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆65Updated last week
• twolinin / longphase
  ☆112Updated last month
• dietvin / pod5Viewer
  GUI for inspecting POD5 files
  ☆30Updated 6 months ago
• human-pangenomics / HPP_Year1_Assemblies
  Assemblies from HPP Year 1 production
  ☆73Updated 2 years ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆78Updated last month
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆118Updated last month
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆104Updated 4 months ago
• AntonBankevich / LJA
  ☆116Updated last week
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆31Updated 3 months ago
• marbl / HG002
  A complete diploid human genome
  ☆121Updated 5 months ago
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆97Updated this week
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆166Updated 7 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 7 months ago