yukiteruono / pbsim3Links
PBSIM3: a simulator for all types of PacBio and ONT long reads
☆84Updated 6 months ago
Alternatives and similar repositories for pbsim3
Users that are interested in pbsim3 are comparing it to the libraries listed below
Sorting:
- Pipeline to convert a haploid assembly into diploid☆105Updated 9 months ago
- Pangenome-based genome inference☆149Updated 2 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆127Updated 3 months ago
- Collection of tools for the analysis of CpG data☆96Updated 3 months ago
- Visualise and analyse nanopore (ONT) raw signals☆122Updated last month
- A list of software for pangenomics☆134Updated last week
- ☆141Updated 5 months ago
- De novo assembly from Oxford Nanopore reads.☆86Updated 4 months ago
- Phased assembly variant caller☆126Updated 10 months ago
- Yet another k-mer analyzer☆149Updated 3 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆124Updated 3 years ago
- ☆119Updated last week
- A complete diploid human genome☆136Updated last month
- Read Until client library for Nanopore Sequencing☆106Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆113Updated last week
- Wally: Visualization of aligned sequencing reads and contigs☆119Updated 2 weeks ago
- Fast and accurate coordinate conversion between assemblies☆117Updated 2 weeks ago
- This is the standalone version of the EviAnn pipeline☆127Updated this week
- Research release basecalling models and configurations☆115Updated 5 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆113Updated 6 months ago
- Constructing a pangenome gene graph☆196Updated 2 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- A local-haplotagging-based small and structural variant caller☆87Updated last week
- Assemblies from HPP Year 1 production☆78Updated 2 years ago
- ☆117Updated 2 weeks ago
- ☆78Updated 9 months ago
- Call select base modifications in PacBio HiFi reads☆14Updated 8 months ago
- A tool for somatic structural variant calling using long reads☆147Updated last week
- VarIant SimulatOR for short, long and linked reads☆49Updated last year