yukiteruono / pbsim3
PBSIM3: a simulator for all types of PacBio and ONT long reads
☆72Updated 3 weeks ago
Alternatives and similar repositories for pbsim3:
Users that are interested in pbsim3 are comparing it to the libraries listed below
- Pipeline to convert a haploid assembly into diploid☆99Updated last month
- Visualise and analyse nanopore (ONT) raw signals☆112Updated last month
- De novo assembly from Oxford Nanopore reads.☆80Updated last week
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- A list of software for pangenomics☆104Updated last week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆97Updated 2 weeks ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆112Updated 2 months ago
- Collection of tools for the analysis of CpG data☆79Updated last month
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- Predict 5mC in PacBio HiFi reads☆1Updated last month
- Pangenome-based genome inference☆123Updated this week
- ☆76Updated 2 weeks ago
- Read Until client library for Nanopore Sequencing☆103Updated 5 months ago
- ☆61Updated this week
- TSEBRA: Transcript Selector for BRAKER☆47Updated 4 months ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆72Updated last year
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆77Updated 3 months ago
- ☆112Updated last week
- ☆37Updated this week
- ☆109Updated last week
- VarIant SimulatOR for short, long and linked reads☆47Updated 4 months ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 5 months ago
- Simple pileup-based variant caller☆88Updated 2 weeks ago
- Research release basecalling models and configurations☆107Updated 8 months ago
- Phased assembly variant caller☆110Updated 3 months ago
- Dfam Transposable Element Tools Docker container.☆88Updated 3 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆121Updated 2 weeks ago
- ☆48Updated 6 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆58Updated 2 months ago