Python wrapper for wavefront alignment using WFA2-lib
☆38Nov 19, 2024Updated last year
Alternatives and similar repositories for pywfa
Users that are interested in pywfa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 7 months ago
- WFA-lib: Wavefront alignment algorithm library v2☆211Mar 18, 2026Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆215Mar 20, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated 2 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated last week
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated 11 months ago
- Just another minhash implementation.☆12Mar 12, 2026Updated last month
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated last week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A complete diploid human genome☆146Mar 27, 2026Updated last month
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆17Apr 10, 2026Updated 3 weeks ago
- Optimal sequence-to-graph alignment with recombinations☆40Updated this week
- Kmer Analysis of Pileups for Genotyping☆39Mar 6, 2026Updated last month
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 4 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Apr 14, 2026Updated 2 weeks ago
- ☆59Dec 12, 2023Updated 2 years ago
- Assemblies from HPP Year 1 production☆81May 9, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Phased structural variant discovery in pangenomes☆42Apr 20, 2026Updated last week
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆79May 20, 2024Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 2 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 9 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated last year
- a minimal, scriptable genome browser for python☆54Dec 20, 2024Updated last year
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆140Jun 23, 2024Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆32Feb 13, 2026Updated 2 months ago
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆19Apr 9, 2024Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Local alignment search with k-bounded matching statistics.☆23Aug 19, 2025Updated 8 months ago
- Aligns short reads using dynamic seed size with strobemers☆196Updated this week