Python wrapper for wavefront alignment using WFA2-lib
☆38Nov 19, 2024Updated last year
Alternatives and similar repositories for pywfa
Users that are interested in pywfa are comparing it to the libraries listed below
Sorting:
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- base-level dotplots from PAF alignments☆32Sep 18, 2025Updated 6 months ago
- WFA-lib: Wavefront alignment algorithm library v2☆210Updated this week
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆212Updated this week
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Oct 13, 2024Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Sep 2, 2025Updated 6 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated 10 months ago
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated 10 months ago
- Just another minhash implementation.☆12Mar 12, 2026Updated last week
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last month
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆102Apr 22, 2024Updated last year
- A complete diploid human genome☆145Mar 9, 2026Updated last week
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆17Mar 13, 2026Updated last week
- Optimal sequence-to-graph alignment with recombinations☆40Jul 25, 2025Updated 7 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆38Dec 30, 2025Updated 2 months ago
- Kmer Analysis of Pileups for Genotyping☆37Mar 6, 2026Updated 2 weeks ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 5 months ago
- Phased structural variant discovery in pangenomes☆39Mar 14, 2026Updated last week
- ☆59Dec 12, 2023Updated 2 years ago
- Assemblies from HPP Year 1 production☆80May 9, 2023Updated 2 years ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆79May 20, 2024Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated last month
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 7 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 10 months ago
- Simple pileup-based variant caller☆94Apr 25, 2025Updated 10 months ago
- a minimal, scriptable genome browser for python☆53Dec 20, 2024Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated last month
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆139Jun 23, 2024Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆19Apr 9, 2024Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Aligns short reads using dynamic seed size with strobemers☆194Updated this week
- Infering ancestral synteny with hierarchical orthologous groups☆38Oct 17, 2025Updated 5 months ago