Alternatives and similar repositories for pywfa:

Users that are interested in pywfa are comparing it to the libraries listed below

• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆35Updated 3 weeks ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 3 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆44Updated last year
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆33Updated last month
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆25Updated 3 months ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 8 months ago
• pierrepeterlongo / back_to_sequences
  ☆41Updated 2 months ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆30Updated 3 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆36Updated 3 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated last month
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆27Updated 2 years ago
• pangenome / impg
  implicit pangenome graph
  ☆51Updated this week
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆41Updated 2 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated last month
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆34Updated last year
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆30Updated 2 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• JustinChu / ntsm
  This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…
  ☆28Updated 2 months ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆18Updated 5 months ago
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆21Updated this week
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆48Updated 9 months ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆31Updated 2 years ago
• JensUweUlrich / ReadBouncer
  Fast and scalable nanopore adaptive sampling
  ☆33Updated last year
• codeatcg / VRPG
  an interactive visualization and interpretation framework of reference-projected pangenome graphs
  ☆33Updated 2 weeks ago
• human-pangenomics / hprc-tutorials
  ☆14Updated 9 months ago
• EvolBioInf / phylonium
  ♥ Fast and Accurate Estimation of Evolutionary Distances
  ☆27Updated 8 months ago