kcleal / pywfaLinks
Python wrapper for wavefront alignment using WFA2-lib
☆35Updated 8 months ago
Alternatives and similar repositories for pywfa
Users that are interested in pywfa are comparing it to the libraries listed below
Sorting:
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 2 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 9 months ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated last week
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 3 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 weeks ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago
- Differential k-mer analysis☆36Updated last year
- ☆42Updated last week
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 8 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆23Updated last week
- Fast and exact gap-affine partial order alignment☆53Updated 2 weeks ago
- General purpose utility related to GAF files☆29Updated this week
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- VNTR annotation using motif selection☆36Updated 2 weeks ago
- Kmer Analysis of Pileups for Genotyping☆32Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated last month
- ☆48Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 8 months ago