simuG: a general-purpose genome simulator
☆102Jun 18, 2025Updated last year
Alternatives and similar repositories for simuG
Users that are interested in simuG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆34Feb 25, 2026Updated 4 months ago
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Sep 28, 2025Updated 9 months ago
- ☆17Jan 5, 2021Updated 5 years ago
- ☆20Feb 18, 2025Updated last year
- A program to call variants from genome alignment☆83Apr 29, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- WinPCA. A package for windowed principal component analysis.☆53Jun 9, 2026Updated 2 weeks ago
- ☆14Jan 31, 2020Updated 6 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- ☆288Dec 29, 2025Updated 6 months ago
- Structural variant toolkit for VCFs☆417May 22, 2026Updated last month
- A tool for simulating random mutations in any genome☆43Feb 7, 2024Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- profile basd Illumina pair-end Reads Simulator☆28Dec 18, 2023Updated 2 years ago
- Toolset for SV simulation, comparison and filtering☆422Dec 1, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- ✏️ Genome assembly polishing & SNV detection☆73Jun 12, 2026Updated 2 weeks ago
- Long read aligner☆114May 26, 2023Updated 3 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- Long read / genome alignment software☆325Dec 16, 2025Updated 6 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 8 months ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆15Jun 24, 2025Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- ☆10Jun 9, 2025Updated last year
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Long read based human genomic structural variation detection with cuteSV☆290Mar 26, 2026Updated 3 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Jun 21, 2026Updated last week
- A tool for recovering synteny blocks from multiple alignment☆33Oct 18, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- ☆31Nov 25, 2019Updated 6 years ago
- An accurate GFF3/GTF lift over pipeline☆546Aug 1, 2023Updated 2 years ago
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- ☆16Nov 25, 2019Updated 6 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated last year