yjx1217 / LRSDAYView external linksLinks
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
☆34Mar 4, 2024Updated last year
Alternatives and similar repositories for LRSDAY
Users that are interested in LRSDAY are comparing it to the libraries listed below
Sorting:
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Sep 28, 2025Updated 4 months ago
- Calculate circos format data of GC content and GC skew from genome data.☆12Sep 20, 2025Updated 4 months ago
- This is code for running Orthofinder -> PAML☆12Jul 27, 2016Updated 9 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated 8 months ago
- simuG: a general-purpose genome simulator☆99Jun 18, 2025Updated 7 months ago
- ☆12Apr 10, 2021Updated 4 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- ☆27Aug 29, 2025Updated 5 months ago
- Add multiple thread function for genome comparison☆16Sep 29, 2021Updated 4 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆117Jul 22, 2025Updated 6 months ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆18Updated this week
- ☆15Aug 1, 2021Updated 4 years ago
- Scripts for NGS processing☆17Sep 6, 2017Updated 8 years ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆17Aug 27, 2024Updated last year
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated last year
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 6 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆35Oct 27, 2025Updated 3 months ago
- Various bioinformatics tools☆20Oct 29, 2024Updated last year
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- my commonly used perl script☆19Aug 28, 2020Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- Making diploid assembly becomes common practice for genomic study☆30Oct 2, 2017Updated 8 years ago
- A box of genomics tools☆21Aug 26, 2020Updated 5 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆109Jan 30, 2026Updated 2 weeks ago
- Post Assembly Variants Finder☆18Oct 7, 2022Updated 3 years ago
- 🗻 Visualization of genome/gene sequence synteny☆42Dec 13, 2023Updated 2 years ago
- Genomic plot in trellis layout☆42Jan 30, 2026Updated 2 weeks ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 4 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆381Feb 6, 2026Updated last week
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated last year
- luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, a…☆10Nov 28, 2023Updated 2 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- A CNN model to identify MEIs in WGS☆12Mar 4, 2025Updated 11 months ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 9 years ago