LRSDAY: Long-read Sequencing Data Analysis for Yeasts
☆34Aug 21, 2026Updated 2 months ago
Alternatives and similar repositories for LRSDAY
Users that are interested in LRSDAY are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A computational framework for tetrad-based genotyping & recombination landscape analysis☆11Feb 18, 2025Updated last year
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Sep 28, 2025Updated last year
- simuG: a general-purpose genome simulator☆105Jun 18, 2025Updated last year
- Calculate circos format data of GC content and GC skew from genome data.☆12Sep 20, 2025Updated last year
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- ☆12Apr 10, 2021Updated 5 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- my commonly used perl script☆20Aug 28, 2020Updated 6 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆28Dec 7, 2022Updated 3 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆127Jul 22, 2025Updated last year
- CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.☆12Jan 15, 2021Updated 5 years ago
- Add multiple thread function for genome comparison☆17Sep 29, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- ☆167Apr 13, 2026Updated 6 months ago
- This is code for running Orthofinder -> PAML☆14Jul 27, 2016Updated 10 years ago
- A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data☆10Oct 1, 2024Updated 2 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 5 years ago
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆111Oct 2, 2020Updated 6 years ago
- B73Ab10 genome assembly methods☆17Jan 21, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Convert HAL to VG☆24Updated this week
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Annotation Pipeline for NLR genes☆17Dec 6, 2018Updated 7 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆20Jul 24, 2026Updated 3 months ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated 2 years ago
- ☆17Mar 2, 2024Updated 2 years ago
- Visualization component of Pangenome Schematics for 1,000s of individuals and gigabase genomes.☆10Apr 23, 2024Updated 2 years ago
- The MARVEL assembler☆80Jul 7, 2023Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆41May 21, 2020Updated 6 years ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆16Aug 27, 2024Updated 2 years ago
- Scripts for NGS processing☆16Sep 6, 2017Updated 9 years ago
- BioNanoAnalyst is a tool providing GUI to assess the genome assembly quality using BioNano data.☆12Oct 30, 2020Updated 6 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆422Oct 27, 2026Updated last week
- Alignment-free pangenome browser and analysis toolkit☆106Oct 27, 2026Updated last week
- circos pipeline☆20May 8, 2021Updated 5 years ago