malonge / CallSV
A long-read SV calling pipeline
☆10Updated 3 years ago
Related projects: ⓘ
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- The tools are used for displaying hic signal of genome☆21Updated 3 years ago
- conserved non-coding sequence☆14Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆33Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- ☆16Updated 2 years ago
- B73Ab10 genome assembly methods☆16Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆21Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Dynamic Elongation of a Genome Assembly Path☆14Updated 4 months ago
- Draw a dot plot from a paf alignment☆22Updated 8 months ago
- Selection outlier scan with population branch statistic☆12Updated 6 months ago
- ☆15Updated 4 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆19Updated last month
- ☆31Updated 4 years ago
- ☆18Updated last year
- ☆39Updated 4 months ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆20Updated last month
- ☆27Updated 2 years ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆12Updated 5 years ago
- Yet another Hi-C scaffolding tool☆19Updated last year
- ☆15Updated 3 weeks ago
- Inferring natural selection by comparative population genomic analysis across species☆20Updated 10 months ago
- ☆15Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆13Updated 3 months ago
- ☆15Updated 4 months ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆13Updated last year
- ☆14Updated 2 years ago
- ☆20Updated 6 months ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆13Updated 2 months ago