malonge / CallSVLinks
A long-read SV calling pipeline
☆12Updated 3 years ago
Alternatives and similar repositories for CallSV
Users that are interested in CallSV are comparing it to the libraries listed below
Sorting:
- Script to help assessing the evolutionary history of a TE family☆16Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆15Updated 5 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆10Updated 4 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated last month
- ☆16Updated 9 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 2 weeks ago
- The MafFilter genome alignment processor☆19Updated 2 months ago
- conserved non-coding sequence☆14Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- ☆42Updated last year
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 4 years ago
- ☆15Updated 4 years ago
- ☆14Updated 5 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- Yet another Hi-C scaffolding tool☆21Updated 8 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Updated 4 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- ☆30Updated 5 years ago
- ☆30Updated 6 months ago
- ☆27Updated 3 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- plot genome alignment synteny☆21Updated 5 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago