malonge / CallSVLinks
A long-read SV calling pipeline
☆12Updated 4 years ago
Alternatives and similar repositories for CallSV
Users that are interested in CallSV are comparing it to the libraries listed below
Sorting:
- ☆16Updated last year
- Script to help assessing the evolutionary history of a TE family☆16Updated 6 years ago
- ☆31Updated 5 years ago
- ☆16Updated 5 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 5 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- ☆43Updated last year
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 months ago
- Identification of conserved non-coding sequences in plants☆30Updated last month
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- ☆38Updated last month
- ☆16Updated 4 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆10Updated 4 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆23Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- conserved non-coding sequence☆15Updated 3 years ago
- ☆14Updated 6 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 2 months ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- The MafFilter genome alignment processor☆19Updated 6 months ago
- Characterization of Structural Variation in Chinese samples☆18Updated 3 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago