malonge / CallSVLinks
A long-read SV calling pipeline
☆12Updated 4 years ago
Alternatives and similar repositories for CallSV
Users that are interested in CallSV are comparing it to the libraries listed below
Sorting:
- Script to help assessing the evolutionary history of a TE family☆16Updated 6 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆16Updated 6 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 6 months ago
- ☆16Updated last year
- Consensus genome annotation using OMA☆31Updated 6 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆19Updated this week
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆16Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- ☆31Updated 6 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Updated last year
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- Construct and Analyze the North American Vitis pangenome☆29Updated 4 months ago
- Modified TIR-Learner for Rice genome☆12Updated 6 years ago
- conserved non-coding sequence☆16Updated 3 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11Updated 4 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- Identification of conserved non-coding sequences in plants☆31Updated 2 months ago
- The MafFilter genome alignment processor☆19Updated last week
- ☆44Updated last year
- Yet another Hi-C scaffolding tool☆22Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- ☆29Updated 2 years ago
- ☆38Updated 2 months ago
- Simple tools for working with Hi-C data☆18Updated 7 years ago