baoxingsong / genomeAlignmentLinks
Compare different genome alignment tools using a wide range of genomes with different complexities.
☆13Updated 2 years ago
Alternatives and similar repositories for genomeAlignment
Users that are interested in genomeAlignment are comparing it to the libraries listed below
Sorting:
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 5 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Convert HAL to VG☆22Updated last year
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 months ago
- The MafFilter genome alignment processor☆19Updated 3 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- recompute GFA link overlaps☆26Updated 2 years ago
- the pangenome graph evaluator☆28Updated 4 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- ☆21Updated this week
- ☆25Updated 3 weeks ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- convert PAF format to CHAIN format☆32Updated 3 months ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 2 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- Identification of conserved non-coding sequences in plants☆21Updated 4 months ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆14Updated 6 years ago