Compare different genome alignment tools using a wide range of genomes with different complexities.
☆14Dec 3, 2022Updated 3 years ago
Alternatives and similar repositories for genomeAlignment
Users that are interested in genomeAlignment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- conserved non-coding sequence☆16Feb 21, 2022Updated 4 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Mar 2, 2023Updated 3 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- ☆12Feb 16, 2026Updated last month
- Code used in article "Uncovering the transcriptional regulatory network involved in boosting wheat regeneration and transformation".☆13Mar 21, 2023Updated 3 years ago
- ☆13Nov 29, 2022Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- 🗻 Visualization of genome/gene sequence synteny☆42Dec 13, 2023Updated 2 years ago
- Add multiple thread function for genome comparison☆16Sep 29, 2021Updated 4 years ago
- Convert HAL to VG☆23Aug 12, 2024Updated last year
- ☆27Jan 13, 2026Updated 2 months ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 4 years ago
- ☆17Jan 5, 2021Updated 5 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- C implementation of the Landau-Vishkin algorithm☆35Apr 8, 2022Updated 3 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year
- ☆44May 8, 2024Updated last year
- A simple C++17 header-only library for generating SVG plots☆10Mar 17, 2024Updated 2 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 5 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆76Aug 2, 2022Updated 3 years ago
- Strand and WGD aware syntenic gene identification☆15Oct 16, 2025Updated 5 months ago
- ☆68Mar 16, 2026Updated last week
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated 11 months ago
- ☆12Apr 10, 2021Updated 4 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆11Jan 26, 2022Updated 4 years ago
- ☆11Feb 20, 2024Updated 2 years ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- SV calling for diploid assemblies☆31Mar 22, 2024Updated 2 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- std::map/std::set implementation using the adaptive radix tree☆15Jul 14, 2021Updated 4 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28May 24, 2021Updated 4 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 6 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆31Sep 15, 2022Updated 3 years ago