baoxingsong / genomeAlignmentLinks
Compare different genome alignment tools using a wide range of genomes with different complexities.
☆13Updated 2 years ago
Alternatives and similar repositories for genomeAlignment
Users that are interested in genomeAlignment are comparing it to the libraries listed below
Sorting:
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Convert HAL to VG☆22Updated last year
- The MafFilter genome alignment processor☆19Updated 4 months ago
- ☆25Updated 2 months ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- the pangenome graph evaluator☆28Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 9 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated last month
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- SV calling for diploid assemblies☆28Updated last year
- TD2☆18Updated 4 months ago
- ☆16Updated 3 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ☆31Updated 5 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated 3 weeks ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆20Updated 2 years ago