mkpython3 / Mutation-Simulator
A tool for simulating random mutations in any genome
☆38Updated last year
Alternatives and similar repositories for Mutation-Simulator:
Users that are interested in Mutation-Simulator are comparing it to the libraries listed below
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Linear-time de novo Long Read Assembler☆40Updated 3 months ago
- WDL workflows for variant calling and assembly using ONT☆33Updated this week
- Structural variant (SV) analysis tools☆36Updated 10 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated 3 weeks ago
- ☆24Updated 2 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Hitting associations with k-mers☆45Updated 2 years ago
- ☆27Updated 2 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 2 months ago
- ☆27Updated 3 years ago
- Reference-guided multiple sequence alignment of viral genomes☆68Updated 3 months ago
- a lexicographically-based GTF/GFF sorter☆34Updated last week
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆37Updated last month
- Tumour-only somatic mutation calling using long reads☆26Updated 6 months ago
- ☆40Updated 2 months ago
- ☆20Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 9 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆49Updated this week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 2 months ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 9 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Immuological gene typing and annotation for genome assembly☆35Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last week
- ☆30Updated 11 months ago