mkpython3 / Mutation-SimulatorLinks
A tool for simulating random mutations in any genome
☆42Updated last year
Alternatives and similar repositories for Mutation-Simulator
Users that are interested in Mutation-Simulator are comparing it to the libraries listed below
Sorting:
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 10 months ago
- WDL workflows for variant calling and assembly using ONT☆35Updated last week
- Hitting associations with k-mers☆45Updated 3 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 9 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated 2 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆35Updated last month
- Toolkit to convert the output of common variant calling programs to VCF☆23Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 4 months ago
- ☆59Updated last year
- ☆28Updated 3 years ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆52Updated 3 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Find Unique genomic Regions☆30Updated this week
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated last week
- Complex structural variant visualization for HiFi sequencing data☆37Updated last month
- ☆26Updated 6 months ago
- Interactive phylogenetic tree viewer/editor☆47Updated 2 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆49Updated 3 weeks ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- perSVade: personalized Structural Variation detection☆40Updated last month
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last week