☆14Jan 31, 2020Updated 6 years ago
Alternatives and similar repositories for miniception
Users that are interested in miniception are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Sep 7, 2019Updated 7 years ago
- ☆12Feb 14, 2023Updated 3 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- BagMinHash - Minwise Hashing Algorithm for Weighted Sets☆26Aug 26, 2020Updated 6 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆59Mar 13, 2025Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Aug 17, 2022Updated 4 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 7 years ago
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Mar 13, 2020Updated 6 years ago
- Compressed, associative, and exact hash table for k-mers☆11Oct 15, 2026Updated 2 weeks ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆36Dec 9, 2024Updated last year
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆11Feb 2, 2021Updated 5 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 5 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆32Jul 27, 2023Updated 3 years ago
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- Minimum plain text representation of kmer sets☆20Jan 30, 2025Updated last year
- An alignment tool for optical mapping data☆10May 29, 2020Updated 6 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 4 years ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆10Jun 9, 2020Updated 6 years ago
- Very large scale k-mer counting and analysis on Apache Spark.☆19Sep 30, 2026Updated last month
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆141Jun 23, 2024Updated 2 years ago
- Just a python fasta/q parser based on kseq.h☆14Jul 13, 2020Updated 6 years ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆75Apr 1, 2026Updated 7 months ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- ☆14Jan 20, 2016Updated 10 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Sep 8, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆24Apr 2, 2021Updated 5 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 6 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- DartMinHash: Fast Sketching for Weighted Sets☆12Dec 8, 2025Updated 10 months ago
- Bidirectional WFA (Paper)☆51May 20, 2024Updated 2 years ago