Kingsford-Group / miniception
☆12Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for miniception
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- ☆25Updated 3 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated 8 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Optimal distance lower bound k-mer sampling.☆12Updated 4 months ago
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 5 years ago
- ☆25Updated 3 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 3 years ago
- ☆10Updated 8 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 2 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 4 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 4 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- Parallel Sequence to Graph Alignment☆35Updated last year
- Validation of sycnmers compared to minimizers☆11Updated 4 years ago
- ☆14Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 7 months ago
- Linear-time, low-memory construction of variation graphs☆18Updated 4 years ago
- Fast and cache-efficient full-text pangenome index☆25Updated this week
- Next Index to Query Kmer Intersection☆16Updated last year
- Utilities to detect and profile `het-kmers`☆11Updated 3 months ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆10Updated 5 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated 5 months ago