Alternatives and similar repositories for miniception

Users that are interested in miniception are comparing it to the libraries listed below

• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆25Updated 2 years ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆10Updated 4 years ago
• langmead-lab / vargas
  ☆24Updated 3 months ago
• Kingsford-Group / remuval
  ☆12Updated 6 years ago
• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆16Updated 2 years ago
• OndrejSladky / fmsi
  FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform
  ☆21Updated last week
• ZekunYin / RabbitMash
  RabbitMash: an efficient highly optimized implementation of Mash.
  ☆20Updated 2 years ago
• algbio / matchtigs
  Minimum plain text representation of kmer sets
  ☆16Updated 10 months ago
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 5 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated this week
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆15Updated 7 years ago
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆52Updated 8 months ago
• VGP / vgp-tools
  ☆28Updated 7 months ago
• Daniel-Liu-c0deb0t / dlb-kmer-sampling
  Optimal distance lower bound k-mer sampling.
  ☆12Updated last year
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 4 years ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• SJTU-CGM / CDKAM
  ☆11Updated 4 years ago
• ratschlab / tensor-sketch-alignment
  Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.
  ☆13Updated 3 years ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆11Updated 6 years ago
• ekg / wflign
  the we-flyin WFA-guided ultralong tiling sequence aligner
  ☆10Updated 4 years ago
• chfi / gfainject
  ☆17Updated 2 years ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆28Updated last year
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• yanboANU / Kmer2SNP
  ☆26Updated 4 years ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated last year
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated last year
• medvedevgroup / UST
  ☆24Updated 4 years ago
• thegenemyers / PHASE-MERS
  Utilities to detect and profile `het-kmers`
  ☆11Updated last year
• chfi / rs-wfa
  Rust bindings to the wavefront algorithm C implementation
  ☆17Updated 3 years ago