Kingsford-Group / miniceptionLinks
☆14Updated 5 years ago
Alternatives and similar repositories for miniception
Users that are interested in miniception are comparing it to the libraries listed below
Sorting:
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- ☆25Updated 4 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- ☆12Updated 5 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 4 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- ☆16Updated 2 years ago
- Minimum plain text representation of kmer sets☆17Updated 4 months ago
- ☆15Updated 4 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 2 months ago
- Importing vg json graphs to Python data structures.☆10Updated 4 years ago
- Validation of sycnmers compared to minimizers☆12Updated last month
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆20Updated 5 months ago
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 5 years ago
- ☆28Updated 2 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 2 weeks ago
- GBWT-based handle graph☆31Updated 3 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 8 months ago