VGP / vgp-toolsLinks
☆28Updated 3 months ago
Alternatives and similar repositories for vgp-tools
Users that are interested in vgp-tools are comparing it to the libraries listed below
Sorting:
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆43Updated last year
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- ☆25Updated 4 years ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆32Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- ☆15Updated 4 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Differential k-mer analysis☆36Updated last year
- An experimental tool to estimate the similarity between all pairs of contigs☆35Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- ☆14Updated last year
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 3 months ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago