☆10Jun 9, 2025Updated 10 months ago
Alternatives and similar repositories for Are-reads-required
Users that are interested in Are-reads-required are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome size estimation from long read overlaps☆86Updated this week
- ☆31Updated this week
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated 8 months ago
- Plasmid analysis using rearrangement distances☆53Updated this week
- ☆15Feb 10, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genomewide Epistasis Analysis on Bacteria☆15May 13, 2025Updated 11 months ago
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 3 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆32Aug 1, 2025Updated 9 months ago
- Bifrost graph gene caller.☆98Apr 12, 2026Updated 3 weeks ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 9 months ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆18Jan 13, 2026Updated 3 months ago
- ☆15Jan 28, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 2 months ago
- Split k-mer analysis – version 2☆105Apr 9, 2026Updated 3 weeks ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆39Oct 29, 2024Updated last year
- Chimera: A Versatile Metagenomic Classification Tool☆21Feb 1, 2026Updated 3 months ago
- Quickly get coverage statistics given reads and an assembly☆16May 13, 2024Updated last year
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 4 months ago
- Bioinformatics tool for Locus Visualisation☆165Mar 30, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 8 months ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Updated this week
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 9 months ago
- Development repo for pyani-plus (the next iteration of pyani)☆32Updated this week
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆28Apr 13, 2026Updated 3 weeks ago
- Calculate confidence scores from Kraken2 output☆25Feb 18, 2024Updated 2 years ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆29Mar 13, 2026Updated last month
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆87Mar 12, 2026Updated last month
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆48Feb 20, 2026Updated 2 months ago
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 3 months ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 2 months ago
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated 6 months ago
- Interpretative standards for AMR genotypes☆29Mar 24, 2026Updated last month
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆89Apr 24, 2026Updated last week
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 8 months ago