yjx1217 / VarathonLinks
A scalable variant calling and benchmarking framework supporting both short and long reads.
☆12Updated 7 months ago
Alternatives and similar repositories for Varathon
Users that are interested in Varathon are comparing it to the libraries listed below
Sorting:
- A pipeline for isoseq☆23Updated 7 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 4 years ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.☆9Updated 5 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆27Updated 5 months ago
- ☆25Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆40Updated 8 months ago
- ☆21Updated 2 years ago
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated 3 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- ☆14Updated 4 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆32Updated 8 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆55Updated last month
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆36Updated 2 months ago
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- ☆21Updated 6 years ago
- This is a method to find telomeres and centromeres in plants.☆40Updated last year
- ☆43Updated last year
- ☆15Updated 5 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- ☆24Updated 2 years ago
- ☆15Updated 3 years ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 5 years ago
- ☆25Updated 3 years ago
- scripts☆16Updated 6 years ago