A scalable variant calling and benchmarking framework supporting both short and long reads.
☆14Sep 28, 2025Updated 9 months ago
Alternatives and similar repositories for Varathon
Users that are interested in Varathon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆34Feb 25, 2026Updated 5 months ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 8 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Obsolete!! Begin to turn to PrimerServer2☆10Jul 22, 2019Updated 7 years ago
- simuG: a general-purpose genome simulator☆102Jun 18, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 4 years ago
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 4 years ago
- Reference-agnostic Representation and Visualization of Pan-genomes☆18Sep 16, 2021Updated 4 years ago
- Supplementary files for our Aneuploidy Detection paper☆10Jul 5, 2018Updated 8 years ago
- ☆14Nov 2, 2017Updated 8 years ago
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- ☆22Sep 22, 2022Updated 3 years ago
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year
- ☆23Jan 11, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆76Jan 12, 2026Updated 6 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18May 30, 2026Updated last month
- Human pan-genome analysis pipeline☆30Apr 30, 2020Updated 6 years ago
- Python3 command-line and GUI tools for common codon usage statistics given a FASTA of Coding sequences☆13Dec 9, 2025Updated 7 months ago
- gfftools - Galaxy toolshed repository☆15Sep 13, 2017Updated 8 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆30May 6, 2026Updated 2 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Sep 4, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- 生物信息学入门的系列课程，包括Linux, shell, Python 编程，建库测序，基因组学，以及系统进化，常用软件使用等内容。☆23Sep 16, 2021Updated 4 years ago
- Identification of segmental duplications in the genome☆29Mar 1, 2022Updated 4 years ago
- R package for large-scale CNV analysis from RNA-seq☆20Dec 21, 2023Updated 2 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- Example of SGTK application for E.coli dataset:☆31Jul 13, 2020Updated 6 years ago
- Simple tools for analyze memory usage of Linux processes☆18Nov 7, 2021Updated 4 years ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆36Jul 15, 2026Updated last week
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12May 4, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cookiecutter for snakemake slurm profile☆16Jul 22, 2023Updated 3 years ago
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Jul 10, 2026Updated 2 weeks ago
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- R package: ICD-9 and ICD-10 code utility functions and datasets☆20Sep 11, 2015Updated 10 years ago
- A de novo prediction tool of chromatin accessible regions for plant genomes☆10Aug 12, 2021Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆30Mar 5, 2018Updated 8 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 11 months ago