☆17Jan 5, 2021Updated 5 years ago
Alternatives and similar repositories for pubLRasm
Users that are interested in pubLRasm are comparing it to the libraries listed below
Sorting:
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- base-level dotplots from PAF alignments☆32Sep 18, 2025Updated 5 months ago
- Parallel Sequence to Graph Alignment☆36Nov 26, 2022Updated 3 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆11Jan 26, 2022Updated 4 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- ☆28Sep 28, 2024Updated last year
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Dec 24, 2021Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Jun 12, 2025Updated 8 months ago
- Align subreads to ccs reads☆14Jun 11, 2025Updated 8 months ago
- ☆28Apr 9, 2025Updated 10 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆60Updated this week
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- Yet another k-mer analyzer☆160Dec 30, 2025Updated 2 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated 11 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆77Apr 30, 2021Updated 4 years ago
- de Bruijn Graph-based read aligner☆35Sep 3, 2018Updated 7 years ago
- extract MSAs from genome variation graphs☆34Sep 20, 2020Updated 5 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆23Nov 20, 2025Updated 3 months ago
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆184Sep 19, 2024Updated last year
- A fast K-mer counter for high-fidelity shotgun datasets☆140Jan 19, 2026Updated last month
- A long read simulator based on badread idea☆22Oct 7, 2022Updated 3 years ago