Alternatives and similar repositories for pubLRasm:

Users that are interested in pubLRasm are comparing it to the libraries listed below

• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• marbl / rukki
  Extracting paths from assembly graphs
  ☆22Updated 9 months ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• PacificBiosciences / actc
  Align subreads to ccs reads
  ☆13Updated last year
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆23Updated 3 weeks ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated last year
• rchikhi / 2022-pangenome-graphs-intro
  ☆21Updated 4 months ago
• AlgoLab / malva
  genotyping by Mapping-free ALternate-allele detection of known VAriants
  ☆10Updated last year
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 9 months ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 3 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆26Updated 5 months ago
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 4 months ago
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆15Updated 4 years ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated 7 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 8 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆34Updated last year
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 2 months ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated this week
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆22Updated last week
• GTPB / CPANG22
  Computational Pangenomics
  ☆17Updated 2 years ago
• lh3 / gffio
  ☆32Updated 2 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆21Updated 6 months ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆26Updated 9 months ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• baoxingsong / genomeAlignment
  Compare different genome alignment tools using a wide range of genomes with different complexities.
  ☆13Updated 2 years ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆24Updated 3 years ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago