lh3 / pubLRasm
☆17Updated 4 years ago
Alternatives and similar repositories for pubLRasm:
Users that are interested in pubLRasm are comparing it to the libraries listed below
- recompute GFA link overlaps☆25Updated 2 years ago
- Align subreads to ccs reads☆13Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 9 months ago
- ☆21Updated 5 months ago
- ☆16Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- Extracting paths from assembly graphs☆22Updated 10 months ago
- convert variation graph alignments to coverage maps over nodes☆23Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 6 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 4 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- Prefix-renaming FASTA records really fast.☆17Updated 8 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Convert HAL to VG☆22Updated 7 months ago
- A web-based, interactive pangenome visualization tool☆21Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 10 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 7 months ago
- FastK based version of Merqury☆22Updated this week
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 3 months ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- ☆10Updated 4 years ago
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- Differential k-mer analysis☆34Updated last year
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆15Updated 3 weeks ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 9 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- the pangenome graph evaluator☆26Updated 3 years ago