rcedgar / urmapLinks
URMAP ultra-fast read mapper
☆38Updated 5 years ago
Alternatives and similar repositories for urmap
Users that are interested in urmap are comparing it to the libraries listed below
Sorting:
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- ☆28Updated 7 months ago
- ☆32Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 4 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago
- Find Unique genomic Regions☆32Updated 3 weeks ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 8 months ago
- ☆31Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 2 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- ☆44Updated 3 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 2 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- ☆35Updated 5 years ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated 10 months ago