rcedgar / urmapLinks
URMAP ultra-fast read mapper
☆38Updated 5 years ago
Alternatives and similar repositories for urmap
Users that are interested in urmap are comparing it to the libraries listed below
Sorting:
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 2 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated last month
- ☆28Updated 5 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 2 months ago
- ☆34Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated 9 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 6 months ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated 3 weeks ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Find Unique genomic Regions☆30Updated 2 weeks ago
- Tumour-only somatic mutation calling using long reads☆27Updated 11 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- GFA insert into GenomicSQLite☆48Updated 4 years ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆32Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆33Updated last year
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆32Updated 11 months ago
- extract MSAs from genome variation graphs☆33Updated 5 years ago