rcedgar / urmapLinks
URMAP ultra-fast read mapper
☆38Updated 5 years ago
Alternatives and similar repositories for urmap
Users that are interested in urmap are comparing it to the libraries listed below
Sorting:
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- Population-wide Deletion Calling☆35Updated 8 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 3 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 5 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- ☆28Updated 8 months ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 9 months ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated last year
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- ☆35Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- A streaming method for mapping nanopore raw signals☆32Updated 4 years ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- ☆45Updated last month
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆33Updated last year
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Easy genomic regions for short-read variant calling☆45Updated 3 months ago
- ☆30Updated 2 years ago