pdimens / LepWrapLinks
A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
☆14Updated 6 months ago
Alternatives and similar repositories for LepWrap
Users that are interested in LepWrap are comparing it to the libraries listed below
Sorting:
- R package to draw syntenic plots in 3 different styles☆42Updated 4 months ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 5 years ago
- ☆44Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 3 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 3 months ago
- ☆16Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 9 months ago
- ☆16Updated 6 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- ☆22Updated 6 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated last year
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Scripts and resources for the haploblocks manuscript☆18Updated 5 years ago
- ☆29Updated 2 years ago
- ☆31Updated 6 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 3 months ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 6 months ago
- ☆32Updated 11 months ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Updated 12 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Newick tree processing☆13Updated last month
- issues for semina "Data Visulization"☆13Updated last week