Alternatives and similar repositories for LepWrap

Users that are interested in LepWrap are comparing it to the libraries listed below

• baduelp / public
  ☆16Updated last year
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆45Updated last week
• amvarani / Plant_Annotation_TEs
  Methods and recipes for Plant Genome Annotation - Transposable Elements
  ☆20Updated 8 months ago
• srividya22 / geneLift
  Gene model transfer from closely related reference genomes using cDNA alignments
  ☆10Updated 5 years ago
• yiliao1022 / LASTZ_SV_pipeline
  ☆16Updated 6 years ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆18Updated 2 years ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆33Updated 2 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆18Updated 6 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆42Updated 4 years ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆27Updated 7 years ago
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆16Updated 6 years ago
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆19Updated 6 years ago
• vgteam / giraffe-sv-paper
  ☆44Updated last year
• caulai / Mo17_genome_assembly
  ☆14Updated 6 years ago
• LAILAB-CAU / update-Mo17
  ☆29Updated 2 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆30Updated 4 months ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆18Updated 5 years ago
• yilinZhang-bio / Watermelon-pangenome
  ☆27Updated 2 years ago
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆42Updated 4 months ago
• SamueleSoraggi / HMMploidy
  A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
  ☆18Updated 3 years ago
• hewm2008 / PopLDdecay
  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
  ☆28Updated last year
• vgteam / sv-genotyping-paper
  ☆31Updated 6 years ago
• wlz0726 / Population_Genomics_Scripts
  Scripts of population genomics analysis
  ☆36Updated 7 years ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆31Updated 2 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• baozg / phased-assembly-check
  ☆32Updated last year