A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
☆15Jun 24, 2025Updated 9 months ago
Alternatives and similar repositories for LepWrap
Users that are interested in LepWrap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year
- R package for binmap☆12Aug 3, 2023Updated 2 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated last month
- ☆19Sep 20, 2020Updated 5 years ago
- ☆16Jun 9, 2025Updated 10 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- QTL mapping in outcrossing species using CIM☆10Feb 5, 2026Updated 2 months ago
- ☆25Jun 8, 2022Updated 3 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…☆17Sep 27, 2017Updated 8 years ago
- ☆23Jan 11, 2019Updated 7 years ago
- Pipeline for Analysis of ChIP-Seq data☆10May 8, 2024Updated last year
- Bulked-Segregant Analysis using vcf file with or without parents☆33Apr 1, 2026Updated last week
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- ☆15May 31, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Tao Yan's Plot Toolkit☆12Aug 20, 2019Updated 6 years ago
- Python language bindings for bwa☆12Mar 27, 2026Updated 2 weeks ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Apr 28, 2023Updated 2 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 6 months ago
- ☆17Nov 19, 2025Updated 4 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Jun 6, 2019Updated 6 years ago
- scripts used to download and analyze insect assemblies from GenBank☆15Feb 16, 2021Updated 5 years ago
- ☆17Jul 7, 2025Updated 9 months ago
- ☆13Oct 30, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- ☆14Jul 27, 2019Updated 6 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 5 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆33Sep 11, 2025Updated 7 months ago
- This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolk…☆17Jan 16, 2025Updated last year
- Scripts for NGS processing☆16Sep 6, 2017Updated 8 years ago
- A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the…☆17Mar 19, 2023Updated 3 years ago
- Yet another Hi-C scaffolding tool☆22Oct 23, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆18Feb 15, 2024Updated 2 years ago
- QTL mapping with binmap data☆18May 18, 2019Updated 6 years ago
- Various bioinformatics tools☆20Oct 29, 2024Updated last year
- Parallel Genomic evaluations in R☆16Sep 26, 2024Updated last year
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Jan 11, 2021Updated 5 years ago
- ☆12Oct 13, 2023Updated 2 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago