pdimens / LepWrapLinks
A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
☆13Updated 3 months ago
Alternatives and similar repositories for LepWrap
Users that are interested in LepWrap are comparing it to the libraries listed below
Sorting:
- R package to draw syntenic plots in 3 different styles☆42Updated last month
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Genome alignment and synteny plots☆32Updated 2 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- ☆25Updated 3 weeks ago
- ☆16Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 5 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆18Updated 5 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 3 weeks ago
- ☆15Updated 5 years ago
- ☆32Updated 6 months ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 5 years ago
- ☆42Updated last year
- Scripts of population genomics analysis☆36Updated 7 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 3 months ago
- A box of genomics tools☆21Updated 5 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Scripts and resources for the haploblocks manuscript☆17Updated 5 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆12Updated 2 years ago
- ☆16Updated 5 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 8 months ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago