yiqunchen / GenePTLinks
☆292Updated last year
Alternatives and similar repositories for GenePT
Users that are interested in GenePT are comparing it to the libraries listed below
Sorting:
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆300Updated 8 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆222Updated 7 months ago
- ☆331Updated 5 months ago
- ☆360Updated 8 months ago
- ☆128Updated 6 months ago
- Arc Virtual Cell Atlas☆432Updated 5 months ago
- ☆329Updated last year
- ☆336Updated last week
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆432Updated this week
- ☆81Updated 2 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆98Updated last year
- Comprehensive suite for evaluating perturbation prediction models☆94Updated last week
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆62Updated 9 months ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆430Updated last month
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆260Updated 4 months ago
- ☆93Updated last month
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆281Updated last week
- ☆73Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆96Updated 7 months ago
- GeneCompass☆92Updated last week
- P-NET, Biologically informed deep neural network for prostate cancer classification and discovery☆161Updated 3 years ago
- ☆112Updated 8 months ago
- ☆24Updated last month
- RNA-seq prediction with deep convolutional neural networks.☆199Updated last month
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆383Updated this week
- ☆141Updated last year
- Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.☆76Updated last week
- Images and other data from the JUMP Cell Painting Consortium☆177Updated last week
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆151Updated 8 months ago