yiqunchen / GenePTView external linksLinks
☆308Mar 18, 2024Updated last year
Alternatives and similar repositories for GenePT
Users that are interested in GenePT are comparing it to the libraries listed below
Sorting:
- ☆1,473Nov 12, 2025Updated 3 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆332Feb 1, 2025Updated last year
- ☆79Jan 9, 2026Updated last month
- ☆390Nov 23, 2025Updated 2 months ago
- ☆29Jan 22, 2025Updated last year
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆166Feb 25, 2025Updated 11 months ago
- A model developed for the generation of scRNA-seq data☆85Jan 21, 2026Updated 3 weeks ago
- Arc Virtual Cell Atlas☆492Feb 7, 2026Updated last week
- Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA☆24Jan 14, 2026Updated 3 weeks ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61May 30, 2024Updated last year
- Comprehensive suite for evaluating perturbation prediction models☆122Jan 16, 2026Updated 3 weeks ago
- 🏃 The go-to single-cell Foundation Model☆138Dec 18, 2025Updated last month
- UCE is a zero-shot foundation model for single-cell gene expression data☆242Feb 27, 2025Updated 11 months ago
- ☆836Apr 20, 2025Updated 9 months ago
- ☆402Jan 21, 2026Updated 3 weeks ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆16Dec 8, 2024Updated last year
- ☆97Aug 26, 2025Updated 5 months ago
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆110Oct 3, 2025Updated 4 months ago
- Single-cell perturbation analysis☆284Updated this week
- ☆127Feb 13, 2025Updated last year
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆35Jul 29, 2025Updated 6 months ago
- ☆13Sep 30, 2024Updated last year
- Reusability report of scBERT☆16Jul 14, 2024Updated last year
- ☆156Jul 3, 2024Updated last year
- ☆92Aug 18, 2025Updated 5 months ago
- ☆22Oct 30, 2022Updated 3 years ago
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆807Nov 4, 2025Updated 3 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆150Nov 23, 2025Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆77Aug 17, 2024Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆134Aug 14, 2024Updated last year
- ☆15Jul 8, 2022Updated 3 years ago
- GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction☆21Oct 29, 2024Updated last year
- Deep probabilistic analysis of single-cell and spatial omics data☆1,563Updated this week
- A tool for semi-automatic cell type classification☆451Jan 31, 2026Updated last week
- ☆51Mar 4, 2025Updated 11 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- ☆27Jul 2, 2024Updated last year
- ☆18Apr 30, 2025Updated 9 months ago
- ☆19Apr 8, 2025Updated 10 months ago