Alternatives and similar repositories for GenePT

Users that are interested in GenePT are comparing it to the libraries listed below

• theislab / single-cell-transformer-papers
  ☆337Updated 8 months ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆329Updated 11 months ago
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆238Updated 11 months ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆388Updated last week
• ArcInstitute / arc-virtual-cell-atlas
  Arc Virtual Cell Atlas
  ☆488Updated last month
• TencentAILabHealthcare / scBERT
  ☆347Updated 2 years ago
• biomap-research / scFoundation
  ☆387Updated 2 months ago
• Genentech / SpatialAgent
  ☆134Updated 9 months ago
• gao-lab / GLUE
  Graph-linked unified embedding for single-cell multi-omics data integration
  ☆451Updated 2 months ago
• Genentech / PerturbQA
  ☆38Updated 4 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆101Updated last year
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆65Updated last year
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆118Updated 2 weeks ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆89Updated last week
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆145Updated 2 months ago
• bowang-lab / scGPT-spatial
  ☆124Updated 11 months ago
• jkobject / geneformer
  ☆91Updated 5 months ago
• ArcInstitute / state
  State is a machine learning model that predicts cellular perturbation response across diverse contexts
  ☆506Updated this week
• zou-group / CellVoyager
  ☆101Updated 4 months ago
• marakeby / pnet_prostate_paper
  P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
  ☆165Updated 4 years ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆164Updated 11 months ago
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆233Updated 3 weeks ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆155Updated last year
• snap-stanford / SATURN
  ☆154Updated last year
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆146Updated last year
• OmicsML / dance
  DANCE: a deep learning library and benchmark platform for single-cell analysis
  ☆384Updated last week
• apeterswu / Awesome-Bio-Foundation-Models
  A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.
  ☆285Updated 8 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆109Updated last month
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆142Updated 11 months ago