QuKunLab / MultiomeBenchmarkingLinks
☆49Updated 7 months ago
Alternatives and similar repositories for MultiomeBenchmarking
Users that are interested in MultiomeBenchmarking are comparing it to the libraries listed below
Sorting:
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆56Updated last year
- ☆18Updated 3 years ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆21Updated 4 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆26Updated last year
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆33Updated 2 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- ☆56Updated last year
- Gene group activity utility functions for Scanpy☆90Updated 9 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆55Updated 4 months ago
- ACTIONet single-cell analysis framework☆42Updated last year
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- Predict RNA velocity through deep learning☆70Updated last year
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- ☆51Updated 4 months ago
- End-to-end analysis of spatial multi-omics data☆93Updated last month
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61Updated last year
- SIMBA: SIngle-cell eMBedding Along with features☆19Updated last year
- Spatial transcriptomics of heart tissue☆95Updated last year
- ☆30Updated 2 months ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- scLearn:Learning for single cell assignment☆35Updated 9 months ago
- Reproducing result from the paper☆34Updated 4 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated last year
- ☆44Updated 3 years ago
- ☆16Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆103Updated this week
- ☆114Updated 4 months ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆22Updated 4 months ago
- ☆61Updated last year