☆53Mar 4, 2025Updated last year
Alternatives and similar repositories for MultiomeBenchmarking
Users that are interested in MultiomeBenchmarking are comparing it to the libraries listed below
Sorting:
- ☆11Jul 18, 2025Updated 8 months ago
- ☆18Jul 30, 2022Updated 3 years ago
- PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).☆62Mar 7, 2026Updated last week
- Deposited codes for snMultiome in human cortex manuscript☆13Aug 12, 2024Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆23May 16, 2025Updated 10 months ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated last year
- A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders☆28Jul 1, 2024Updated last year
- A module for working with snap files in Python☆37May 5, 2020Updated 5 years ago
- ☆18Sep 13, 2022Updated 3 years ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆18Dec 1, 2024Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆157Nov 23, 2025Updated 3 months ago
- Multi-omics data analysis for rare population inference using single-cell graph transformer☆23Nov 5, 2025Updated 4 months ago
- CellRank 2's reproducibility repository.☆15Sep 4, 2024Updated last year
- ☆18Nov 24, 2024Updated last year
- ☆15Feb 28, 2022Updated 4 years ago
- ☆61Jul 23, 2024Updated last year
- scVI extension for unspliced RNA☆16May 18, 2025Updated 10 months ago
- ☆132Feb 13, 2025Updated last year
- ☆39Dec 31, 2025Updated 2 months ago
- ☆10Dec 11, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 7 months ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- Goslin is the Grammar on succinct lipid nomenclature.☆13Nov 20, 2025Updated 4 months ago
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆36Mar 30, 2025Updated 11 months ago
- Open Targets Platform web applications☆11Updated this week
- ☆12Mar 5, 2024Updated 2 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆13Jan 9, 2026Updated 2 months ago
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- Reproducible Snakemake workflow for benchmarking single-cell chromatin accessibility analysis methods, published in https://doi.org/10.11…☆17Jan 24, 2026Updated last month
- ☆33Feb 21, 2024Updated 2 years ago
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆33Jul 9, 2025Updated 8 months ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆16Dec 1, 2025Updated 3 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago
- A foundation model for single-cell epigenomic data☆58Jan 6, 2026Updated 2 months ago
- ☆33Nov 9, 2022Updated 3 years ago
- ☆35Oct 22, 2025Updated 4 months ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆31Jun 19, 2024Updated last year