Alternatives and similar repositories for MultiomeBenchmarking

Users that are interested in MultiomeBenchmarking are comparing it to the libraries listed below

• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆54Updated 10 months ago
• suinleelab / contrastiveVI
  ☆55Updated last year
• bm2-lab / scMVP
  ☆30Updated last month
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆25Updated 8 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆65Updated 2 years ago
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆27Updated 8 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆76Updated 5 months ago
• theislab / scTab
  ☆58Updated 8 months ago
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆22Updated 2 years ago
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆30Updated 2 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆75Updated 2 months ago
• lanagarmire / Asgard
  ☆42Updated last year
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆42Updated last year
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆47Updated 9 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 3 months ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆66Updated last year
• huidongchen / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆19Updated last year
• jlakkis / sciPENN
  ☆17Updated 2 years ago
• theislab / scArches-reproducibility
  Reproducing result from the paper
  ☆33Updated 4 years ago
• Roy-lab / scMTNI
  ☆26Updated 5 months ago
• bioinfo-biols / Flow2Spatial
  Flow2Spatial reconstructs spatial proteomics through transfer learning.
  ☆16Updated 2 weeks ago
• dpeerlab / ENVI
  ☆48Updated last week
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆24Updated 7 months ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆39Updated 8 months ago
• SmritiChawla / Precily
  ☆30Updated 2 years ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆35Updated 10 months ago
• Teichlab / HCA_Heart_ver2
  ☆35Updated last year
• bm2-lab / scLearn
  scLearn：Learning for single cell assignment
  ☆35Updated 5 months ago