☆54Mar 4, 2025Updated last year
Alternatives and similar repositories for MultiomeBenchmarking
Users that are interested in MultiomeBenchmarking are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Jul 18, 2025Updated last year
- ☆18Jul 30, 2022Updated 3 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).☆69May 10, 2026Updated 2 months ago
- Deposited codes for snMultiome in human cortex manuscript☆14Aug 12, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Multi-omics data analysis for rare population inference using single-cell graph transformer☆23Nov 5, 2025Updated 8 months ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated 2 years ago
- A module for working with snap files in Python☆37May 5, 2020Updated 6 years ago
- A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders☆28Jul 1, 2024Updated 2 years ago
- ☆18Sep 13, 2022Updated 3 years ago
- ☆15Jan 14, 2025Updated last year
- Benchmarking computational doublet-detection methods for single-cell RNA sequencing data☆10Feb 25, 2021Updated 5 years ago
- ☆18Nov 24, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆63Jul 23, 2024Updated last year
- ☆15Feb 28, 2022Updated 4 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- ☆10Dec 11, 2024Updated last year
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆14Jan 9, 2026Updated 6 months ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆22Dec 1, 2024Updated last year
- ☆143Feb 13, 2025Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆166Nov 23, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CellRank 2's reproducibility repository.☆15Sep 4, 2024Updated last year
- 🏃🏃 Your next-gen single-cell Foundation Model☆37Updated this week
- Aligning gene expression trajectories of single-cell reference and query systems☆89Aug 10, 2025Updated 11 months ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆25May 16, 2025Updated last year
- ☆20May 12, 2026Updated 2 months ago
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆20May 28, 2026Updated last month
- Goslin is the Grammar on succinct lipid nomenclature.☆13Jun 18, 2026Updated last month
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- ☆12Mar 5, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Monorepo for the Open Targets Platform — a data integration tool for systematic drug target identification and prioritisation☆11Updated this week
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆15Feb 23, 2026Updated 4 months ago
- Reproducible Snakemake workflow for benchmarking single-cell chromatin accessibility analysis methods, published in https://doi.org/10.11…☆17Jan 24, 2026Updated 5 months ago
- ☆33Nov 9, 2022Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Jul 13, 2026Updated last week
- ☆37Oct 22, 2025Updated 9 months ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago