jkobject / geneformerLinks
☆92Updated 5 months ago
Alternatives and similar repositories for geneformer
Users that are interested in geneformer are comparing it to the libraries listed below
Sorting:
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆149Updated 2 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆238Updated 11 months ago
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆74Updated last year
- Single-Cell (Perturbation) Model Library☆89Updated 2 weeks ago
- ☆134Updated 9 months ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆61Updated 3 weeks ago
- GeneCompass☆109Updated 2 months ago
- Comprehensive suite for evaluating perturbation prediction models☆120Updated 2 weeks ago
- A model developed for the generation of scRNA-seq data☆84Updated 2 weeks ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆164Updated 11 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61Updated last year
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆101Updated last year
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- ☆69Updated 6 months ago
- Single-cell perturbation effects prediction benchmark☆58Updated 3 weeks ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆89Updated 3 years ago
- ☆95Updated 5 months ago
- ☆79Updated 3 weeks ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- ☆155Updated last year
- Models and datasets for perturbational single-cell omics☆172Updated 3 years ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆100Updated 5 months ago
- Modeling complex perturbations with CellFlow☆114Updated last week
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆65Updated last year
- Computational Optimization of DNA Activity (CODA)☆67Updated 10 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆77Updated 10 months ago
- ☆83Updated 5 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆142Updated 11 months ago
- ☆100Updated 2 months ago
- ☆30Updated last month