☆118Aug 18, 2025Updated 11 months ago
Alternatives and similar repositories for geneformer
Users that are interested in geneformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆423Nov 23, 2025Updated 8 months ago
- 🏃 The go-to single-cell Foundation Model☆156Updated this week
- ☆1,612Apr 29, 2026Updated 3 months ago
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆143Apr 28, 2026Updated 3 months ago
- Comprehensive suite for evaluating perturbation prediction models☆148Jul 27, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆359Dec 13, 2023Updated 2 years ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆170Nov 23, 2025Updated 8 months ago
- ☆111Jul 16, 2026Updated 3 weeks ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆62May 30, 2024Updated 2 years ago
- GeneCompass☆120Feb 10, 2026Updated 6 months ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆629Jul 24, 2026Updated 2 weeks ago
- Single-cell perturbation effects prediction benchmark☆98May 6, 2026Updated 3 months ago
- ☆58Apr 7, 2026Updated 4 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆276Jul 10, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆70Dec 29, 2024Updated last year
- Arc Virtual Cell Atlas☆570Jul 1, 2026Updated last month
- X-Cell: a diffusion language model for genome-scale perturbation prediction☆105Mar 16, 2026Updated 4 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆390Feb 1, 2025Updated last year
- ☆57Mar 4, 2026Updated 5 months ago
- ☆12May 14, 2025Updated last year
- ☆90Jul 18, 2025Updated last year
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆24Jan 31, 2026Updated 6 months ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆116Jun 28, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆25Jul 22, 2026Updated 2 weeks ago
- ☆16Dec 18, 2024Updated last year
- ☆19May 23, 2025Updated last year
- ☆92Feb 17, 2026Updated 5 months ago
- A model developed for the generation of scRNA-seq data☆94Jan 21, 2026Updated 6 months ago
- Agentic design of virtual cell models☆161Aug 1, 2026Updated last week
- parallel differential expression for single-cell perturbation sequencing☆25Jul 14, 2026Updated 3 weeks ago
- A foundation model for single-cell epigenomic data☆71Jun 3, 2026Updated 2 months ago
- A human universal senescence index to evaluate celluar senescence☆44Sep 11, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆28Jun 4, 2023Updated 3 years ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆322Jul 8, 2026Updated last month
- ☆84Jan 9, 2026Updated 7 months ago
- 🏃🏃 Your next-gen single-cell Foundation Model☆38Updated this week
- ☆17Jan 30, 2026Updated 6 months ago
- ☆18Jul 30, 2022Updated 4 years ago
- ☆30Oct 14, 2024Updated last year