Alternatives and similar repositories for scGenePT

Users that are interested in scGenePT are comparing it to the libraries listed below

• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆122Updated last week
• theislab / scTab
  ☆61Updated last year
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆60Updated last year
• QuKunLab / MultiomeBenchmarking
  ☆50Updated 8 months ago
• bm2-lab / STAMP
  ☆14Updated 6 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆97Updated 3 weeks ago
• czi-ai / transcriptformer
  ☆93Updated 3 weeks ago
• snap-stanford / SATURN
  ☆144Updated last year
• mlbio-epfl / systema
  ☆42Updated 4 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆64Updated last year
• TencentAILabHealthcare / scTranslator
  ☆62Updated 3 months ago
• nceglia / genevector
  Vector representations of gene co-expression in single cell RNAseq.
  ☆36Updated 3 weeks ago
• const-ae / linear_perturbation_prediction-Paper
  ☆62Updated 4 months ago
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆23Updated 4 months ago
• biomed-AI / CellFM
  ☆87Updated 3 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆57Updated last year
• nitzanlab / biolord
  ☆87Updated last year
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆26Updated last year
• Roy-lab / scMTNI
  ☆30Updated 4 months ago
• suinleelab / contrastiveVI
  ☆57Updated last year
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆44Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆69Updated 2 years ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆154Updated 9 months ago
• ArcInstitute / cell-load
  pytorch dataloaders for single-cell perturbation data
  ☆37Updated last month
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆23Updated 2 years ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆123Updated 8 months ago
• lanagarmire / Asgard
  ☆44Updated last year
• BGIResearch / BioLLM
  ☆28Updated 7 months ago