czi-ai / scGenePTLinks
☆24Updated 8 months ago
Alternatives and similar repositories for scGenePT
Users that are interested in scGenePT are comparing it to the libraries listed below
Sorting:
- ☆11Updated 4 months ago
- single cell foundation model☆104Updated this week
- ☆61Updated last year
- ☆49Updated 6 months ago
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- ☆82Updated 3 weeks ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61Updated last year
- ☆37Updated last month
- ☆78Updated last month
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆60Updated 11 months ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆55Updated last year
- ☆40Updated 4 months ago
- End-to-end analysis of spatial multi-omics data☆94Updated last month
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- Modeling complex perturbations with CellFlow☆85Updated this week
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆148Updated 7 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆63Updated 11 months ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆61Updated 8 months ago
- ☆72Updated last year
- ☆13Updated 6 months ago
- ☆28Updated 4 years ago
- ☆40Updated 2 years ago
- ☆21Updated 3 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆26Updated last year
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆43Updated 2 years ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆145Updated last year
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆33Updated last month
- ☆44Updated last year
- ☆54Updated 10 months ago
- Single-cell biological network inference using a heterogeneous graph transformer☆75Updated 7 months ago