Alternatives and similar repositories for scGenePT

Users that are interested in scGenePT are comparing it to the libraries listed below

• bm2-lab / STAMP
  ☆17Updated 8 months ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆61Updated last year
• theislab / scTab
  ☆62Updated last year
• QuKunLab / MultiomeBenchmarking
  ☆51Updated 10 months ago
• siyuh / Squidiff
  ☆114Updated this week
• TencentAILabHealthcare / scTranslator
  ☆83Updated 5 months ago
• biomed-AI / CellFM
  ☆93Updated 5 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆35Updated 6 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆66Updated last year
• SmritiChawla / Precily
  ☆34Updated 3 years ago
• vandijklab / CINEMA-OT
  ☆35Updated 9 months ago
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆130Updated last month
• nitzanlab / biolord
  ☆90Updated last year
• madilabcode / scNET
  ☆59Updated this week
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆164Updated 11 months ago
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆35Updated 2 months ago
• Genentech / pascient
  ☆18Updated 9 months ago
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆27Updated last year
• suinleelab / contrastiveVI
  ☆60Updated last year
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆102Updated this week
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆22Updated 3 years ago
• czi-ai / transcriptformer
  ☆100Updated 2 months ago
• theislab / prophet
  ☆38Updated last month
• ArcInstitute / cell-load
  pytorch dataloaders for single-cell perturbation data
  ☆42Updated this week
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆59Updated last year
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago
• portrai-io / CELLama
  CELLama Project
  ☆23Updated 2 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆112Updated 4 months ago
• ailabstw / scDrug
  scDrug: From scRNA-seq to Drug Repositioning
  ☆37Updated 2 years ago
• const-ae / linear_perturbation_prediction-Paper
  ☆69Updated 6 months ago