Alternatives and similar repositories for GEARS

Users that are interested in GEARS are comparing it to the libraries listed below

• theislab / single-cell-transformer-papers
  ☆328Updated 4 months ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆332Updated this week
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆221Updated 7 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆73Updated last month
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆164Updated 3 years ago
• biomap-research / scFoundation
  ☆356Updated 8 months ago
• yhr91 / GEARS_misc
  ☆22Updated 11 months ago
• TencentAILabHealthcare / scBERT
  ☆324Updated last year
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆148Updated 7 months ago
• ArcInstitute / arc-virtual-cell-atlas
  Arc Virtual Cell Atlas
  ☆424Updated 5 months ago
• gao-lab / GLUE
  Graph-linked unified embedding for single-cell multi-omics data integration
  ☆427Updated last month
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆124Updated 8 months ago
• jkobject / geneformer
  ☆79Updated last month
• yiqunchen / GenePT
  ☆288Updated last year
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆89Updated this week
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆97Updated last year
• vandijklab / cell2sentence
  Cell2Sentence: Teaching Large Language Models the Language of Biology
  ☆199Updated 3 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆96Updated 6 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆111Updated last year
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆218Updated 3 months ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆88Updated 7 months ago
• ArcInstitute / state
  State is a machine learning model that predicts cellular perturbation response across diverse contexts
  ☆409Updated this week
• Murali-group / Beeline
  BEELINE: evaluation of algorithms for gene regulatory network inference
  ☆194Updated 3 months ago
• Genentech / SpatialAgent
  ☆127Updated 6 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆145Updated last year
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆146Updated 11 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆62Updated 9 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆73Updated 7 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆89Updated 3 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆48Updated 2 months ago