zou-group / GenePertLinks
GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction
☆16Updated last year
Alternatives and similar repositories for GenePert
Users that are interested in GenePert are comparing it to the libraries listed below
Sorting:
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆139Updated last month
- A model developed for the generation of scRNA-seq data☆81Updated 10 months ago
- Modeling complex perturbations with CellFlow☆104Updated last week
- Single-Cell (Perturbation) Model Library☆86Updated 2 weeks ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆234Updated 10 months ago
- ☆67Updated 5 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆100Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆75Updated last year
- ☆96Updated last month
- ☆88Updated last year
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆158Updated 10 months ago
- ☆88Updated 4 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆67Updated last month
- ☆23Updated 4 months ago
- ☆335Updated 7 months ago
- Awesome-AI-Virtual-Cell☆144Updated 2 weeks ago
- ☆377Updated 2 weeks ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆230Updated 6 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- ☆14Updated last year
- ☆90Updated 4 months ago
- GeneCompass☆103Updated 3 weeks ago
- Single-cell perturbation effects prediction benchmark☆42Updated 5 months ago
- A foundation model for single-cell epigenomic data☆51Updated 3 weeks ago
- ☆121Updated 10 months ago
- Models and datasets for perturbational single-cell omics☆171Updated 3 years ago
- 🏃 The go-to single-cell Foundation Model☆126Updated last week
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆124Updated last year
- ☆46Updated 5 months ago