GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction
☆23Oct 29, 2024Updated last year
Alternatives and similar repositories for GenePert
Users that are interested in GenePert are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆30Oct 14, 2024Updated last year
- Interpret perturbation responses from scRNA-seq perturbation experiments☆19Mar 4, 2025Updated last year
- A repository for reproducing experiments from the TxPert paper☆51Mar 25, 2026Updated 6 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆153Aug 14, 2024Updated 2 years ago
- Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA☆28Mar 20, 2026Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Single-cell perturbation effects prediction benchmark☆105Sep 14, 2026Updated last week
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆69Jan 12, 2026Updated 8 months ago
- ☆12May 14, 2025Updated last year
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆24Dec 16, 2025Updated 9 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆410Feb 1, 2025Updated last year
- ☆41Apr 16, 2025Updated last year
- Bayesian Sparse Additive Perturbation Regression, code and simulations☆18Apr 29, 2025Updated last year
- ☆54Sep 23, 2025Updated last year
- CellNavi is a deep learning framework designed to predict genes driving cellular transitions.☆56Jul 10, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆53Jun 16, 2025Updated last year
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆14Aug 8, 2024Updated 2 years ago
- ☆74Jan 14, 2026Updated 8 months ago
- scDFM: Distributional Flow Matching for Robust Single-Cell Perturbation Prediction (ICLR 2026)☆58Apr 22, 2026Updated 5 months ago
- A Predictive World Model of the Transcriptome☆35Oct 18, 2025Updated 11 months ago
- ☆17Jan 30, 2026Updated 7 months ago
- ☆14Aug 10, 2026Updated last month
- ☆22Jun 12, 2026Updated 3 months ago
- ☆13Sep 11, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Documentation and tutorials worth sharing.☆10Dec 7, 2022Updated 3 years ago
- inference of transcription factor activity at the single cell level☆29Jul 2, 2026Updated 2 months ago
- Single-Cell (Perturbation) Model Library☆129Jul 27, 2026Updated last month
- ☆20May 23, 2025Updated last year
- Code and example of the D-SPIN framework☆43Aug 5, 2026Updated last month
- ☆324Mar 18, 2024Updated 2 years ago
- ☆25Nov 3, 2025Updated 10 months ago
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated last year
- Causal Differential Networks (ICML 2025)☆17Jun 3, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆46Sep 20, 2024Updated 2 years ago
- Conditional out-of-distribution prediction☆63Aug 2, 2024Updated 2 years ago
- R package IReNA☆31Nov 13, 2024Updated last year
- This is the alpha version of the CellOracle package☆501Apr 30, 2026Updated 4 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated 2 years ago
- ☆19May 29, 2026Updated 3 months ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago