ArcInstitute / arc-virtual-cell-atlas
Arc Virtual Cell Atlas
☆260Updated last month
Alternatives and similar repositories for arc-virtual-cell-atlas:
Users that are interested in arc-virtual-cell-atlas are comparing it to the libraries listed below
- ☆266Updated this week
- ☆308Updated last month
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆250Updated 2 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆256Updated last week
- UCE is a zero-shot foundation model for single-cell gene expression data☆189Updated last month
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆184Updated 2 months ago
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆121Updated this week
- ☆255Updated last year
- ☆326Updated 2 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆120Updated 2 months ago
- ☆60Updated last year
- GeneCompass☆76Updated 9 months ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆407Updated 3 weeks ago
- Single-Cell (Perturbation) Model Library☆51Updated last month
- An AI Agent for Fully Automated Multi-omic Analyses☆177Updated 5 months ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆68Updated 3 months ago
- Official repository of the data-driven deconvolution approach Sweetwater.☆12Updated 9 months ago
- Models and datasets for perturbational single-cell omics☆154Updated 2 years ago
- ☆298Updated last year
- Benchmarking analysis of data integration tools☆346Updated 3 months ago
- ☆192Updated 11 months ago
- This is the alpha version of the CellOracle package☆347Updated 3 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆139Updated last year
- Reference mapping for single-cell genomics☆360Updated 2 months ago
- Spatial alignment of single cell transcriptomic data.☆289Updated 10 months ago
- ☆120Updated 9 months ago
- Perturbation Analysis in the scverse ecosystem.☆170Updated this week
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆112Updated 2 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆118Updated 2 years ago
- Formalizing and benchmarking open problems in single-cell genomics☆331Updated last week