Alternatives and similar repositories for scLAMBDA:

Users that are interested in scLAMBDA are comparing it to the libraries listed below

• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆57Updated 9 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆60Updated 2 years ago
• ZJUFanLab / SpaTalk
  Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
  ☆69Updated 3 months ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆63Updated 10 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆34Updated 2 months ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆93Updated last month
• dpeerlab / ENVI
  ☆47Updated 3 weeks ago
• zcang / COMMOT
  ☆114Updated 11 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆66Updated last month
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆40Updated 3 years ago
• QuKunLab / MultiomeBenchmarking
  ☆43Updated last month
• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆60Updated last month
• wanglabtongji / CCI
  Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information
  ☆19Updated 2 years ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated 3 months ago
• rsinghlab / scNODE
  scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction
  ☆19Updated 6 months ago
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆65Updated last week
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆34Updated 2 months ago
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆104Updated 6 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆39Updated this week
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆13Updated last year
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆68Updated last year
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆34Updated last month
• QuKunLab / SPACEL
  ☆56Updated 8 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆34Updated 9 months ago
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆56Updated this week
• bowang-lab / DeepVelo
  ☆47Updated last year
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆110Updated 5 months ago
• theislab / scTab
  ☆58Updated 7 months ago
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆26Updated 7 months ago