☆157Jul 3, 2024Updated last year
Alternatives and similar repositories for SATURN
Users that are interested in SATURN are comparing it to the libraries listed below
Sorting:
- UCE is a zero-shot foundation model for single-cell gene expression data☆244Feb 26, 2026Updated last week
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆88Dec 26, 2025Updated 2 months ago
- ☆1,490Nov 12, 2025Updated 3 months ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆42Jul 20, 2025Updated 7 months ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- ☆393Nov 23, 2025Updated 3 months ago
- GeneCompass☆111Feb 10, 2026Updated 3 weeks ago
- ☆63Sep 13, 2024Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆28Nov 6, 2025Updated 4 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 11 months ago
- ☆13Jan 23, 2025Updated last year
- This is the alpha version of the CellOracle package☆422Feb 3, 2026Updated last month
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 7 months ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,573Updated this week
- Transformer for One-Stop Interpretable Cell-type Annotation☆147Mar 4, 2024Updated 2 years ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Spatiotemporal modeling of spatial transcriptomics☆328Feb 25, 2026Updated last week
- A tool for semi-automatic cell type classification☆457Updated this week
- OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit☆18Dec 3, 2025Updated 3 months ago
- ☆13Nov 3, 2023Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆32Aug 13, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 6 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆169Feb 25, 2025Updated last year
- Non-parametric density inference for single-cell analysis.☆73May 22, 2025Updated 9 months ago
- ☆79Jan 9, 2026Updated last month
- Single cell proteomics data processing☆30Feb 9, 2026Updated 3 weeks ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆579Jun 26, 2025Updated 8 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆73Nov 13, 2025Updated 3 months ago
- Reference mapping for single-cell genomics☆399Dec 2, 2025Updated 3 months ago
- iterative clustering pipeline of big single cell datasets.☆36Sep 5, 2025Updated 6 months ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆455Feb 9, 2026Updated 3 weeks ago
- Create cisTarget databases☆56Jun 18, 2025Updated 8 months ago
- A package to help convert different single-cell data formats to each other☆458Feb 20, 2026Updated 2 weeks ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆247Jan 16, 2026Updated last month
- Trends in single cell papers☆17Sep 23, 2024Updated last year