☆176Jul 3, 2024Updated 2 years ago
Alternatives and similar repositories for SATURN
Users that are interested in SATURN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆102May 9, 2026Updated 5 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆351Jul 8, 2026Updated 3 months ago
- ☆1,662Apr 29, 2026Updated 6 months ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 3 years ago
- ☆433Nov 23, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆44Jul 20, 2025Updated last year
- Create cisTarget databases☆65Jun 18, 2025Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆422Feb 1, 2025Updated last year
- Transformer for One-Stop Interpretable Cell-type Annotation☆153Mar 4, 2024Updated 2 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,720Updated this week
- Rigorous integration of single-cell ATAC-seq data using regularized barycentric mapping☆11Aug 30, 2025Updated last year
- This is the alpha version of the CellOracle package☆509Apr 30, 2026Updated 6 months ago
- ☆70Sep 13, 2024Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Aug 6, 2024Updated 2 years ago
- Spatiotemporal modeling of spatial transcriptomics☆347Feb 25, 2026Updated 8 months ago
- GeneCompass☆125Sep 4, 2026Updated 2 months ago
- ☆364Dec 13, 2023Updated 2 years ago
- scPair: Boosting single cell multimodal analysis by leveraging single cell atlases and implicit feature selection☆13Sep 8, 2025Updated last year
- Graph-linked unified embedding for single-cell multi-omics data integration☆483Feb 9, 2026Updated 8 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆192Feb 25, 2025Updated last year
- Single cell perturbation prediction☆361Dec 5, 2024Updated last year
- A tool for semi-automatic cell type classification☆517May 22, 2026Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- scCIPHER: Contextual deep learning on single-cell-enriched knowledge graphs in neurological disorders☆12Dec 13, 2023Updated 2 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆14Mar 7, 2023Updated 3 years ago
- Non-parametric density inference for single-cell analysis.☆77Sep 24, 2026Updated last month
- Easy and comprehensive biological network reconstruction and analysis☆38Sep 8, 2026Updated last month
- Various utility functions for Seurat v5 single-cell analysis☆71Sep 21, 2026Updated last month
- Gene regulatory network inference for RNA velocity and pseudotime data☆29Nov 6, 2025Updated 11 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated 2 years ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 3 years ago
- ☆14Nov 3, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Conversion between scRNA-seq objects☆209May 5, 2026Updated 5 months ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆410Updated this week
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆269Jan 16, 2026Updated 9 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆94Oct 11, 2026Updated 3 weeks ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆649Jun 26, 2025Updated last year
- Spatial alignment of single cell transcriptomic data.☆376Jul 1, 2025Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆179Nov 23, 2025Updated 11 months ago