snap-stanford / SATURN
☆104Updated 2 months ago
Related projects: ⓘ
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆84Updated this week
- UCE is a zero-shot foundation model for single-cell gene expression data☆135Updated last month
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆101Updated 3 weeks ago
- CZ CELLxGENE Discover Census☆79Updated this week
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆50Updated 4 months ago
- Perturbation Analysis in the scverse ecosystem.☆126Updated this week
- Python package to perform enrichment analysis from omics data.☆154Updated last week
- Models and datasets for perturbational single-cell omics☆141Updated 2 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆119Updated last year
- Formalizing and benchmarking open problems in single-cell genomics☆56Updated 2 weeks ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆126Updated 6 months ago
- Create cell sentences from sequencing data☆21Updated last month
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆45Updated 3 weeks ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆140Updated 4 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆47Updated last year
- Cell2Sentence turns scRNA-seq data into text for LLM training.☆82Updated 2 weeks ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆45Updated last week
- LIANA+: an all-in-one framework for cell-cell communication☆153Updated last week
- Additional code and analysis from the single-cell integration benchmarking project☆52Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆82Updated last month
- Multi-omic velocity inference☆105Updated last month
- SIMBA: SIngle-cell eMBedding Along with features☆54Updated 11 months ago
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆98Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆146Updated last month
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆102Updated 7 months ago
- ☆43Updated 7 months ago
- single cell foundation model for Gene network inference and more☆13Updated last week
- spatial transcriptome, single cell☆63Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆74Updated 3 weeks ago
- Metacells - Single-cell RNA Sequencing Analysis☆89Updated last month