☆165Jul 3, 2024Updated last year
Alternatives and similar repositories for SATURN
Users that are interested in SATURN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- UCE is a zero-shot foundation model for single-cell gene expression data☆255Feb 26, 2026Updated 3 months ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆93May 9, 2026Updated 2 weeks ago
- ☆1,566Apr 29, 2026Updated 3 weeks ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆43Jul 20, 2025Updated 10 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆410Nov 23, 2025Updated 6 months ago
- GeneCompass☆116Feb 10, 2026Updated 3 months ago
- ☆65Sep 13, 2024Updated last year
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆13Mar 7, 2023Updated 3 years ago
- OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit☆19Dec 3, 2025Updated 5 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆153Mar 4, 2024Updated 2 years ago
- ☆13Nov 3, 2023Updated 2 years ago
- Spatiotemporal modeling of spatial transcriptomics☆340Feb 25, 2026Updated 3 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆29Nov 6, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Jan 23, 2025Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated last year
- Deep probabilistic analysis of single-cell and spatial omics data☆1,629Updated this week
- This is the alpha version of the CellOracle package☆456Apr 30, 2026Updated 3 weeks ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆80Nov 13, 2025Updated 6 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Jul 5, 2022Updated 3 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- iterative clustering pipeline of big single cell datasets.☆39Sep 5, 2025Updated 8 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆606Jun 26, 2025Updated 11 months ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- ☆356Dec 13, 2023Updated 2 years ago
- Create cisTarget databases☆59Jun 18, 2025Updated 11 months ago
- Non-parametric density inference for single-cell analysis.☆74Apr 10, 2026Updated last month
- A tool for semi-automatic cell type classification☆476May 17, 2026Updated last week
- Scaling Single Cell Analysis to Millions of Cells☆283May 12, 2026Updated 2 weeks ago
- 🏃 The go-to single-cell Foundation Model☆148Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 9 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated last year
- ☆83Jan 9, 2026Updated 4 months ago
- R package for single-cell comparative regulatory analysis☆10Jun 26, 2021Updated 4 years ago
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 3 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆256Jan 16, 2026Updated 4 months ago