snap-stanford / SATURNLinks
β145Updated last year
Alternatives and similar repositories for SATURN
Users that are interested in SATURN are comparing it to the libraries listed below
Sorting:
- scPerturb: A resource and a python/R tool for single-cell perturbation dataβ154Updated 9 months ago
- π The go-to single-cell Foundation Modelβ123Updated this week
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.β65Updated last month
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to reprβ¦β227Updated 5 months ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasetsβ156Updated this week
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.β145Updated 2 years ago
- A modular framework for multimodal cross-cell-type transcriptional regulation modelsβ96Updated 3 months ago
- Transformer for One-Stop Interpretable Cell-type Annotationβ146Updated last year
- β87Updated last year
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.β60Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omicsβ109Updated 2 months ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.β98Updated 2 months ago
- Models and datasets for perturbational single-cell omicsβ168Updated 3 years ago
- β62Updated 4 months ago
- SIMBA: SIngle-cell eMBedding Along with featuresβ64Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leveβ¦β119Updated last year
- GeneCompassβ99Updated last month
- Single-cell perturbation analysisβ217Updated last week
- End-to-end analysis of spatial multi-omics dataβ97Updated last month
- β62Updated 3 months ago
- β119Updated 6 months ago
- Additional code and analysis from the single-cell integration benchmarking projectβ69Updated 2 years ago
- Accelerated, Python-only, single-cell integration benchmarking metricsβ79Updated this week
- UCE is a zero-shot foundation model for single-cell gene expression dataβ228Updated 9 months ago
- CZ CELLxGENE Discover Censusβ114Updated last week
- Python package to perform enrichment analysis from omics data.β241Updated this week
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Networkβ106Updated 2 years ago
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your labβ108Updated 5 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAmsβ180Updated last year
- Code for evaluating single cell foundation models scBERT and scGPTβ46Updated last year