bowang-lab / scGPT-spatialLinks
☆113Updated 9 months ago
Alternatives and similar repositories for scGPT-spatial
Users that are interested in scGPT-spatial are comparing it to the libraries listed below
Sorting:
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆115Updated 7 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆99Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆73Updated last year
- ☆147Updated 10 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆123Updated 5 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆224Updated 8 months ago
- 🏃 The go-to single-cell Foundation Model☆117Updated last week
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆71Updated last year
- A model developed for the generation of scRNA-seq data☆78Updated 8 months ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆63Updated last week
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆59Updated last year
- End-to-end analysis of spatial multi-omics data☆95Updated last week
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- ☆143Updated last year
- ☆31Updated 9 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆144Updated last year
- ☆86Updated last year
- ☆58Updated 3 months ago
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆106Updated 4 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆151Updated 8 months ago
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- ☆138Updated last year
- CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer☆28Updated 2 months ago
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆40Updated last year
- ☆132Updated 7 months ago
- ☆42Updated last week
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 8 months ago
- ☆85Updated 2 months ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆243Updated 2 years ago