sanderlab / scPerturbLinks
scPerturb: A resource and a python/R tool for single-cell perturbation data
☆129Updated 5 months ago
Alternatives and similar repositories for scPerturb
Users that are interested in scPerturb are comparing it to the libraries listed below
Sorting:
- Models and datasets for perturbational single-cell omics☆155Updated 2 years ago
- single cell foundation model for Gene network inference and more☆96Updated this week
- ☆80Updated 11 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆210Updated last month
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆99Updated 5 months ago
- ☆132Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆63Updated last week
- Transformer for One-Stop Interpretable Cell-type Annotation☆143Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆106Updated 11 months ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆57Updated 6 months ago
- Single-cell perturbation analysis☆193Updated last week
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆71Updated last month
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆137Updated 2 years ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆97Updated 6 months ago
- ☆19Updated last month
- Code for evaluating single cell foundation models scBERT and scGPT☆45Updated 11 months ago
- Formalizing and benchmarking open problems in single-cell genomics☆56Updated last month
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆42Updated last week
- ☆36Updated 2 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61Updated last year
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆84Updated last week
- Modeling complex perturbations with CellFlow☆74Updated this week
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆171Updated last year
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆79Updated last month
- ☆110Updated 2 months ago
- Single-Cell (Perturbation) Model Library☆64Updated last week
- CZ CELLxGENE Discover Census☆105Updated this week
- SIMBA: SIngle-cell eMBedding Along with features☆63Updated 9 months ago
- ☆23Updated 2 weeks ago