Alternatives and similar repositories for awesome-foundation-model-single-cell-papers:

Users that are interested in awesome-foundation-model-single-cell-papers are comparing it to the libraries listed below

• theislab / single-cell-transformer-papers
  ☆289Updated 3 weeks ago
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆179Updated last month
• jkobject / geneformer
  ☆44Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆76Updated last week
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆220Updated 4 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆58Updated this week
• gao-lab / GLUE
  Graph-linked unified embedding for single-cell multi-omics data integration
  ☆393Updated 10 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆77Updated 9 months ago
• TencentAILabHealthcare / scBERT
  ☆289Updated last year
• biomap-research / scFoundation
  ☆285Updated last month
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆46Updated 2 weeks ago
• broadinstitute / Tangram
  Spatial alignment of single cell transcriptomic data.
  ☆266Updated 7 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆134Updated 10 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆31Updated 2 months ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆148Updated 2 years ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆110Updated 4 months ago
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆158Updated 3 weeks ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆69Updated 6 months ago
• yiqunchen / GenePT
  ☆233Updated 9 months ago
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆323Updated this week
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆105Updated this week
• snap-stanford / SATURN
  ☆111Updated 6 months ago
• vandijklab / cell2sentence-ft
  Cell2Sentence turns scRNA-seq data into text for LLM training.
  ☆84Updated 4 months ago
• OmicsML / awesome-deep-learning-single-cell-papers
  ☆715Updated 3 months ago
• QuKunLab / SpatialBenchmarking
  ☆114Updated 2 years ago
• scverse / pertpy
  Perturbation Analysis in the scverse ecosystem.
  ☆147Updated last week
• jianhuupenn / SpaGCN
  SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…
  ☆201Updated last year
• jingcheng-du / Gene2vec
  Gene2Vec: Distributed Representation of Genes Based on Co-Expression
  ☆114Updated 2 years ago
• theislab / scarches
  Reference mapping for single-cell genomics
  ☆347Updated last week
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆44Updated 4 months ago