☆438Jan 21, 2026Updated 3 months ago
Alternatives and similar repositories for awesome-foundation-model-single-cell-papers
Users that are interested in awesome-foundation-model-single-cell-papers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆853Apr 20, 2025Updated last year
- ☆341May 23, 2025Updated 11 months ago
- Single-Cell (Perturbation) Model Library☆103Updated this week
- ☆408Nov 23, 2025Updated 5 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆102Mar 28, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆161Nov 23, 2025Updated 5 months ago
- ☆83Jan 9, 2026Updated 4 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆254Feb 26, 2026Updated 2 months ago
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆70Dec 29, 2024Updated last year
- ☆1,551Apr 29, 2026Updated last week
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆115Mar 27, 2026Updated last month
- 🏃 The go-to single-cell Foundation Model☆146Feb 20, 2026Updated 2 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆356Feb 1, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61May 30, 2024Updated last year
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆301May 28, 2025Updated 11 months ago
- Paper collection for single cell foundation models☆38Mar 17, 2024Updated 2 years ago
- Single-Cell Multimodal Prediction via Transformer☆27Feb 7, 2024Updated 2 years ago
- ☆357Dec 13, 2023Updated 2 years ago
- A model developed for the generation of scRNA-seq data☆90Jan 21, 2026Updated 3 months ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆62Jun 9, 2025Updated 11 months ago
- ☆111Aug 18, 2025Updated 8 months ago
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆390Apr 27, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generative Pretraining from Transcriptomes☆17Feb 6, 2023Updated 3 years ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆15Dec 8, 2024Updated last year
- Modeling complex perturbations with CellFlow☆140Updated this week
- ☆110Nov 6, 2025Updated 6 months ago
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆23Jan 31, 2026Updated 3 months ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆465Feb 9, 2026Updated 3 months ago
- ☆33Feb 21, 2024Updated 2 years ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆567Apr 23, 2026Updated 2 weeks ago
- Contextual AI models for single-cell protein biology☆102Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- tools and notes for spatial omics☆355Feb 26, 2025Updated last year
- ☆105Aug 26, 2025Updated 8 months ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,613Apr 30, 2026Updated last week
- Arc Virtual Cell Atlas☆519Feb 12, 2026Updated 2 months ago
- STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images☆46Jul 27, 2025Updated 9 months ago
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆396Apr 16, 2026Updated 3 weeks ago
- Models and datasets for perturbational single-cell omics☆177Aug 19, 2022Updated 3 years ago