☆531Jul 15, 2026Updated last month
Alternatives and similar repositories for awesome-foundation-model-single-cell-papers
Users that are interested in awesome-foundation-model-single-cell-papers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆861Apr 20, 2025Updated last year
- ☆340Updated this week
- Single-Cell (Perturbation) Model Library☆125Jul 27, 2026Updated 3 weeks ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆326Jul 8, 2026Updated last month
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆169Nov 23, 2025Updated 8 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆422Nov 23, 2025Updated 8 months ago
- ☆1,613Apr 29, 2026Updated 3 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆104Mar 28, 2024Updated 2 years ago
- ☆85Jan 9, 2026Updated 7 months ago
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆70Dec 29, 2024Updated last year
- A model developed for the generation of scRNA-seq data☆94Jan 21, 2026Updated 6 months ago
- Comprehensive suite for evaluating perturbation prediction models☆151Jul 27, 2026Updated 3 weeks ago
- Single-cell perturbation effects prediction benchmark☆100May 6, 2026Updated 3 months ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆641Jul 24, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Modeling complex perturbations with CellFlow☆156Updated this week
- Arc Virtual Cell Atlas☆575Jul 1, 2026Updated last month
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆394Feb 1, 2025Updated last year
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆318May 28, 2025Updated last year
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆148Apr 28, 2026Updated 3 months ago
- Awesome-AI-Virtual-Cell: papers, datasets, benchmarks, talks, and community resources for AIVC☆279Updated this week
- ☆58Apr 20, 2025Updated last year
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated 2 years ago
- ☆111Jul 16, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- pytorch dataloaders for single-cell perturbation data☆51Jul 18, 2026Updated last month
- 🏃 The go-to single-cell Foundation Model☆156Aug 11, 2026Updated last week
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆116Jun 28, 2026Updated last month
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆16Dec 8, 2024Updated last year
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆872Nov 4, 2025Updated 9 months ago
- ☆359Dec 13, 2023Updated 2 years ago
- Pytorch implementation of EpiFoundation☆26Feb 25, 2025Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆149Jul 8, 2026Updated last month
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆258Mar 14, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single-cell perturbation analysis☆337Updated this week
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆71Jun 6, 2020Updated 6 years ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆62May 30, 2024Updated 2 years ago
- Single-Cell Multimodal Prediction via Transformer☆27Feb 7, 2024Updated 2 years ago
- Diffusion Model for Single-Cell Multiome Data Generation and Analysis☆42May 19, 2026Updated 2 months ago
- ☆60Apr 7, 2026Updated 4 months ago
- tools and notes for spatial omics☆368Feb 26, 2025Updated last year