Alternatives and similar repositories for awesome-foundation-model-single-cell-papers

Users that are interested in awesome-foundation-model-single-cell-papers are comparing it to the libraries listed below

• theislab / single-cell-transformer-papers
  ☆323Updated 2 months ago
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆213Updated 5 months ago
• OmicsML / awesome-deep-learning-single-cell-papers
  ☆792Updated 3 months ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆278Updated 6 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆64Updated last week
• biomap-research / scFoundation
  ☆348Updated 5 months ago
• TencentAILabHealthcare / scBERT
  ☆321Updated last year
• gao-lab / GLUE
  Graph-linked unified embedding for single-cell multi-omics data integration
  ☆419Updated last month
• ArcInstitute / arc-virtual-cell-atlas
  Arc Virtual Cell Atlas
  ☆386Updated 2 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆95Updated 4 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆71Updated last month
• yiqunchen / GenePT
  ☆274Updated last year
• OmicsML / dance
  DANCE: a deep learning library and benchmark platform for single-cell analysis
  ☆372Updated this week
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆210Updated last month
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆60Updated 7 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆89Updated last year
• jkobject / geneformer
  ☆74Updated 2 months ago
• broadinstitute / Tangram
  Spatial alignment of single cell transcriptomic data.
  ☆311Updated last month
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆373Updated 6 months ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆155Updated 2 years ago
• morris-lab / CellOracle
  This is the alpha version of the CellOracle package
  ☆370Updated 6 months ago
• openproblems-bio / openproblems
  Formalizing and benchmarking open problems in single-cell genomics
  ☆377Updated this week
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆143Updated last year
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆129Updated 5 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆45Updated 11 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆84Updated last month
• ArcInstitute / state
  State is a machine learning model that predicts cellular perturbation response across diverse contexts
  ☆291Updated this week
• theislab / scarches
  Reference mapping for single-cell genomics
  ☆375Updated last week
• vandijklab / cell2sentence
  Cell2Sentence: Teaching Large Language Models the Language of Biology
  ☆185Updated last month
• snap-stanford / SATURN
  ☆132Updated last year