Alternatives and similar repositories for cell2sentence

Users that are interested in cell2sentence are comparing it to the libraries listed below

• Genentech / SpatialAgent
  ☆125Updated 5 months ago
• zou-group / CellVoyager
  ☆85Updated last week
• ArcInstitute / arc-virtual-cell-atlas
  Arc Virtual Cell Atlas
  ☆415Updated 4 months ago
• yiqunchen / GenePT
  ☆282Updated last year
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆218Updated 6 months ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆291Updated 7 months ago
• jkobject / geneformer
  ☆77Updated 3 weeks ago
• snap-stanford / SATURN
  ☆136Updated last year
• ArcInstitute / state
  State is a machine learning model that predicts cellular perturbation response across diverse contexts
  ☆378Updated this week
• bowang-lab / scGPT-spatial
  ☆109Updated 7 months ago
• czi-ai / transcriptformer
  ☆80Updated 3 weeks ago
• cantinilab / scPRINT
  single cell foundation model
  ☆103Updated last week
• theislab / single-cell-transformer-papers
  ☆325Updated 3 months ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆329Updated 3 weeks ago
• aristoteleo / awesome-bioagent-papers
  Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.
  ☆66Updated last week
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆146Updated 6 months ago
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆214Updated 2 months ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆73Updated 6 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆92Updated last year
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆270Updated last week
• biomap-research / scFoundation
  ☆355Updated 7 months ago
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆197Updated 2 weeks ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆61Updated 8 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆89Updated 3 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆95Updated 5 months ago
• biocypher / biochatter
  Backend library for conversational AI in biomedicine
  ☆180Updated 2 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆145Updated last year
• microsoft / zero-shot-scfoundation
  ☆72Updated last year
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆78Updated this week
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year