Alternatives and similar repositories for cell2sentence:

Users that are interested in cell2sentence are comparing it to the libraries listed below

• vandijklab / cell2sentence-ft
  Cell2Sentence turns scRNA-seq data into text for LLM training.
  ☆84Updated 4 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆77Updated 10 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆62Updated 2 weeks ago
• microsoft / zero-shot-scfoundation
  ☆55Updated 5 months ago
• jsxlei / scCLIP
  ☆27Updated 11 months ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆55Updated 8 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆78Updated 3 weeks ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆34Updated 5 months ago
• rahuldhodapkar / cell2sentence
  Create cell sentences from sequencing data
  ☆21Updated 5 months ago
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆42Updated this week
• QuKunLab / MultiomeBenchmarking
  ☆41Updated last year
• QSong-github / SiGra
  Single-cell spatial elucidation through image-augmented graph transformer
  ☆31Updated last year
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆50Updated 2 weeks ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆45Updated 4 months ago
• TencentAILabHealthcare / scPROTEIN
  ☆47Updated last month
• snap-stanford / SATURN
  ☆113Updated 6 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆70Updated 6 months ago
• jkobject / geneformer
  ☆46Updated last year
• theislab / scTab
  ☆56Updated 4 months ago
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆46Updated 7 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆46Updated last month
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆34Updated last week
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆24Updated 5 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆50Updated 6 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆110Updated 5 months ago
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆17Updated 2 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆49Updated 3 years ago
• suinleelab / contrastiveVI
  ☆51Updated 9 months ago
• bowang-lab / genomic-FM
  ☆19Updated last week
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆19Updated 7 months ago