Alternatives and similar repositories for cell-eval

Users that are interested in cell-eval are comparing it to the libraries listed below

• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆172Updated 3 years ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆165Updated 11 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆134Updated last year
• const-ae / linear_perturbation_prediction-Paper
  ☆69Updated 6 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆35Updated 6 months ago
• bm2-lab / scPerturBench
  Single-cell perturbation effects prediction benchmark
  ☆58Updated last month
• nitzanlab / biolord
  ☆90Updated last year
• jkobject / geneformer
  ☆92Updated 5 months ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆114Updated last week
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆84Updated 2 weeks ago
• snap-stanford / SATURN
  ☆155Updated last year
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆135Updated last month
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆89Updated 2 weeks ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆156Updated last year
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆238Updated 11 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆61Updated 3 weeks ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆143Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆149Updated 2 months ago
• microsoft / zero-shot-scfoundation
  ☆79Updated 3 weeks ago
• scverse / pertpy
  Single-cell perturbation analysis
  ☆283Updated this week
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆146Updated last year
• mlbio-epfl / systema
  ☆52Updated 3 weeks ago
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆92Updated 2 months ago
• ArcInstitute / cell-load
  pytorch dataloaders for single-cell perturbation data
  ☆42Updated this week
• czi-ai / transcriptformer
  ☆100Updated 3 months ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆61Updated last year
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆52Updated 4 years ago
• aristoteleo / tabula
  federated learning with tabular learning
  ☆25Updated 11 months ago
• theislab / scgen-reproducibility
  ☆33Updated 5 years ago