ArcInstitute / cell-evalLinks
Comprehensive suite for evaluating perturbation prediction models
☆77Updated 3 weeks ago
Alternatives and similar repositories for cell-eval
Users that are interested in cell-eval are comparing it to the libraries listed below
Sorting:
- Models and datasets for perturbational single-cell omics☆162Updated 3 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆146Updated 6 months ago
- Modeling complex perturbations with CellFlow☆83Updated last week
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆109Updated last year
- ☆49Updated last month
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆27Updated last month
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆46Updated 2 months ago
- Diffusion model for gene regulatory network inference.☆23Updated last month
- single cell foundation model☆103Updated last week
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆123Updated 7 months ago
- A model developed for the generation of scRNA-seq data☆69Updated 6 months ago
- ☆82Updated last year
- ☆63Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- pytorch dataloaders for single-cell perturbation data☆26Updated this week
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆144Updated 10 months ago
- ☆72Updated last year
- ☆36Updated last week
- ☆85Updated 2 years ago
- Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)☆19Updated 3 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆43Updated 2 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆50Updated last month
- ☆136Updated last year
- ☆28Updated 4 years ago
- ☆77Updated 3 weeks ago
- ☆33Updated 5 months ago
- Single-Cell (Perturbation) Model Library☆69Updated 2 weeks ago
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- federated learning with tabular learning☆21Updated 6 months ago
- ☆37Updated 3 months ago