Comprehensive suite for evaluating perturbation prediction models
☆124Mar 24, 2026Updated 2 weeks ago
Alternatives and similar repositories for cell-eval
Users that are interested in cell-eval are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pytorch dataloaders for single-cell perturbation data☆44Mar 8, 2026Updated last month
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆558Feb 24, 2026Updated last month
- parallel differential expression for single-cell perturbation sequencing☆25Apr 2, 2026Updated last week
- ☆15Dec 18, 2024Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆352Feb 1, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆80Jul 18, 2025Updated 8 months ago
- Modeling complex perturbations with CellFlow☆130Updated this week
- Arc Virtual Cell Atlas☆510Feb 12, 2026Updated last month
- ☆77Feb 17, 2026Updated last month
- Store collections of experimental data based on TileDB☆12Mar 30, 2026Updated last week
- ☆38Apr 16, 2025Updated 11 months ago
- a dataloader to work with large single cell datasets from lamindb☆36Feb 19, 2026Updated last month
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆14Oct 20, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆27Oct 14, 2024Updated last year
- ☆17May 23, 2025Updated 10 months ago
- ☆401Nov 23, 2025Updated 4 months ago
- ☆43Sep 23, 2025Updated 6 months ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆168Oct 31, 2024Updated last year
- ☆12Aug 19, 2025Updated 7 months ago
- ☆313Mar 18, 2024Updated 2 years ago
- ☆105Aug 18, 2025Updated 7 months ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆22Sep 12, 2025Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A model developed for the generation of scRNA-seq data☆87Jan 21, 2026Updated 2 months ago
- Sparse Lazy Array Format (SLAF) for Single-Cell Genomics☆58Updated this week
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆63Jan 12, 2026Updated 2 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆147Feb 6, 2025Updated last year
- ☆59Jun 11, 2025Updated 10 months ago
- ☆11Feb 4, 2021Updated 5 years ago
- ☆1,526Nov 12, 2025Updated 4 months ago
- Single Cell Classification using RNA-seq data and Supervised Learning Algorithms☆13May 7, 2016Updated 9 years ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12May 14, 2025Updated 10 months ago
- Benchmarking gene embeddings on single, paired, and gene set tasks☆19Nov 29, 2025Updated 4 months ago
- [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model☆22Mar 12, 2025Updated last year
- Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)☆18Jun 15, 2025Updated 9 months ago
- ☆15Jul 8, 2022Updated 3 years ago
- A repository for reproducing experiments from the TxPert paper☆25Mar 25, 2026Updated 2 weeks ago
- ☆12Jul 13, 2018Updated 7 years ago