☆22Oct 30, 2022Updated 3 years ago
Alternatives and similar repositories for DeepSpaCE
Users that are interested in DeepSpaCE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PyTorch implementation of HisToGene☆57Nov 30, 2021Updated 4 years ago
- Localization of transcribed enhancers and quntification of their usage from the initiation sites of bidirectionally transcribed loci☆14Dec 19, 2024Updated last year
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆67Mar 18, 2024Updated 2 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆16Jul 8, 2019Updated 7 years ago
- ☆59Jan 2, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 3 years ago
- ☆14Feb 21, 2023Updated 3 years ago
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆50Oct 22, 2025Updated 8 months ago
- Her2 Breast Cancer Project☆104Nov 27, 2022Updated 3 years ago
- ☆102May 4, 2026Updated 2 months ago
- Code for spatial subclone paper☆18Jan 23, 2025Updated last year
- ☆21Jun 29, 2022Updated 4 years ago
- A package for analyzing spatial transcriptomics data with Gaussian smoothing, spatial gene correlation network clustering, gene module vi…☆20Apr 3, 2026Updated 3 months ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆28Apr 29, 2026Updated 2 months ago
- <Bioinformatics> scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution☆27Aug 27, 2025Updated 10 months ago
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- ☆57Mar 28, 2025Updated last year
- Cluster Identity Predictor (R package implementation)☆22Mar 8, 2022Updated 4 years ago
- ☆15Oct 4, 2021Updated 4 years ago
- Code for the THItoGene☆30Apr 9, 2025Updated last year
- SCDC☆48Jun 20, 2025Updated last year
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆32Oct 6, 2025Updated 9 months ago
- ☆13Sep 30, 2024Updated last year
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆27Dec 1, 2025Updated 7 months ago
- ☆13May 28, 2025Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆160Aug 3, 2025Updated 11 months ago
- ☆62Apr 26, 2022Updated 4 years ago
- ☆168Dec 20, 2024Updated last year
- Deep learning on histopathology images.☆147Sep 8, 2021Updated 4 years ago
- Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.☆12Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆18Jun 13, 2019Updated 7 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆12Mar 11, 2020Updated 6 years ago
- Evaluation code for the PanNuke dataset☆31Oct 20, 2020Updated 5 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆450Jul 13, 2026Updated last week
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆34Sep 3, 2025Updated 10 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Mar 30, 2023Updated 3 years ago