tmonjo / DeepSpaCE
☆21Updated 2 years ago
Alternatives and similar repositories for DeepSpaCE:
Users that are interested in DeepSpaCE are comparing it to the libraries listed below
- The Single-Cell Pathology Landscape of Breast Cancer☆26Updated 5 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆63Updated last year
- ☆47Updated 3 weeks ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆34Updated 9 months ago
- ☆31Updated 3 months ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆36Updated last month
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated last month
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated 2 months ago
- ☆34Updated last year
- domain adaptation of spatial and single-cell transcriptome☆26Updated 7 months ago
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆24Updated last year
- Spatial direct messaging detected by bivariate Moran☆26Updated 3 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆53Updated last year
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆27Updated last week
- ☆26Updated last month
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆34Updated 2 years ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆18Updated last year
- Interactive applications of stlearn☆15Updated last year
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆14Updated 2 months ago
- Bayesian Analytics for Spatial Segmentation☆27Updated 6 months ago
- ☆21Updated 2 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆25Updated last month
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆12Updated last year
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆17Updated 2 years ago
- Reproducing the experiments of the DestVI paper☆18Updated 3 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆48Updated 2 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆12Updated 6 months ago