Alternatives and similar repositories for DeepSpaCE

Users that are interested in DeepSpaCE are comparing it to the libraries listed below

• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆68Updated 2 years ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆27Updated 6 years ago
• AI4SCR / ATHENA
  ☆35Updated last week
• jianhuupenn / TESLA
  Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA
  ☆64Updated last year
• JiangBioLab / DeepCCI
  ☆21Updated 3 years ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆37Updated 11 months ago
• gevaertlab / GBM360
  Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications
  ☆25Updated 2 years ago
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆28Updated last year
• gevaertlab / sequoia-pub
  SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
  ☆49Updated 8 months ago
• ElementoLab / utag
  ☆41Updated last week
• dpeerlab / ENVI
  ☆52Updated 3 months ago
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆73Updated 2 years ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆41Updated last year
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆30Updated 9 months ago
• Flashiness / METI
  Morphology-Enhanced Spatial Transcriptome Analysis Integrator
  ☆27Updated 10 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆41Updated 11 months ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆34Updated 9 months ago
• 10XGenomics / janesick_nature_comms_2023_companion
  Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…
  ☆29Updated 2 years ago
• huBioinfo / CytoCommunity
  A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …
  ☆25Updated this week
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆128Updated 8 months ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆70Updated 2 months ago
• LiHongCSBLab / SOAPy
  ☆32Updated 11 months ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆77Updated last year
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆22Updated 3 years ago
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆22Updated 5 months ago
• nolanlab / NeighborhoodCoordination
  Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…
  ☆71Updated last year
• Patchouli-M / SequencingCancerFinder
  ☆43Updated 8 months ago
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆100Updated 11 months ago
• bsungwoo / spSeudoMap
  spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
  ☆13Updated last year