☆22Oct 30, 2022Updated 3 years ago
Alternatives and similar repositories for DeepSpaCE
Users that are interested in DeepSpaCE are comparing it to the libraries listed below
Sorting:
- Localization of transcribed enhancers and quntification of their usage from the initiation sites of bidirectionally transcribed loci☆14Dec 19, 2024Updated last year
- PyTorch implementation of HisToGene☆52Nov 30, 2021Updated 4 years ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 2 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Jul 8, 2019Updated 6 years ago
- Code for spatial subclone paper☆16Jan 23, 2025Updated last year
- ☆57Jan 2, 2024Updated 2 years ago
- ☆99Sep 17, 2025Updated 5 months ago
- ☆15Feb 21, 2023Updated 3 years ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 4 years ago
- Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets☆12May 3, 2022Updated 3 years ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆64Mar 18, 2024Updated last year
- R package of CSOmap(developing☆13Mar 22, 2022Updated 3 years ago
- ☆15Oct 4, 2021Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆21Mar 8, 2022Updated 3 years ago
- Joint Modelling Histology and Molecular Markers for Glioma Classification☆12Jun 4, 2025Updated 8 months ago
- ☆21Jun 29, 2022Updated 3 years ago
- SCDC☆46Jun 20, 2025Updated 8 months ago
- ☆160Dec 20, 2024Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆153Aug 3, 2025Updated 6 months ago
- <Bioinformatics> scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution☆27Aug 27, 2025Updated 6 months ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆26May 12, 2020Updated 5 years ago
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆46Oct 22, 2025Updated 4 months ago
- Deep learning on histopathology images.☆142Sep 8, 2021Updated 4 years ago
- Her2 Breast Cancer Project☆97Nov 27, 2022Updated 3 years ago
- ☆53Apr 26, 2022Updated 3 years ago
- ☆19Jun 13, 2019Updated 6 years ago
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆25Dec 1, 2025Updated 3 months ago
- DEqMS is a tool for quantitative proteomic analysis☆24Apr 16, 2025Updated 10 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆100Jun 30, 2022Updated 3 years ago
- HoloNet. Reveal the holograph of functional communication events in spatial transcriptomics. Help understand how microenvironments shapin…☆22Aug 30, 2024Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Sep 3, 2025Updated 5 months ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Mar 3, 2020Updated 5 years ago
- ☆28May 20, 2025Updated 9 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆27Jan 14, 2020Updated 6 years ago
- Code for the THItoGene☆28Apr 9, 2025Updated 10 months ago
- Evaluation code for the PanNuke dataset☆29Oct 20, 2020Updated 5 years ago
- Code for the identification step for CSI-Microbes☆31Nov 25, 2024Updated last year
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 5 years ago
- featselector是一个基于统计分析和模型选择的特征选择器.☆14Mar 4, 2019Updated 6 years ago