SuperBianC / scMulanLinks
Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
☆61Updated last year
Alternatives and similar repositories for scMulan
Users that are interested in scMulan are comparing it to the libraries listed below
Sorting:
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- ☆90Updated 4 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- ☆76Updated 4 months ago
- ☆51Updated 10 months ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆98Updated 4 months ago
- ☆96Updated 2 months ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆67Updated 2 months ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆58Updated last year
- 🏃 The go-to single-cell Foundation Model☆127Updated 3 weeks ago
- GeneCompass☆106Updated last month
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆160Updated 10 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆76Updated last year
- ☆59Updated 2 weeks ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆141Updated last month
- ☆149Updated last year
- PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).☆61Updated last month
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆112Updated 3 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆106Updated 2 years ago
- ☆56Updated last year
- ☆122Updated 7 months ago
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆35Updated last month
- ☆18Updated 3 years ago
- ☆48Updated 6 months ago
- End-to-end analysis of spatial multi-omics data☆101Updated 2 months ago
- ☆89Updated 4 months ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆80Updated 3 months ago
- ☆89Updated last year
- ☆61Updated last year