Alternatives and similar repositories for scMulan:

Users that are interested in scMulan are comparing it to the libraries listed below

• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆56Updated this week
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆64Updated 2 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆83Updated 2 months ago
• QuKunLab / MultiomeBenchmarking
  ☆42Updated 2 weeks ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆52Updated 8 months ago
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆37Updated 3 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆71Updated 8 months ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆61Updated 9 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆138Updated last year
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆64Updated 2 weeks ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆40Updated 6 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆114Updated 3 weeks ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆53Updated 2 months ago
• jkobject / geneformer
  ☆55Updated last year
• microsoft / zero-shot-scfoundation
  ☆57Updated 6 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆78Updated 11 months ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆40Updated last year
• theislab / scTab
  ☆57Updated 6 months ago
• labomics / midas
  ☆51Updated last month
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆66Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆52Updated 3 weeks ago
• SmritiChawla / Precily
  ☆30Updated 2 years ago
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆76Updated 3 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆41Updated last month
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆90Updated 2 weeks ago
• QuKunLab / SPACEL
  ☆55Updated 7 months ago
• jlakkis / sciPENN
  ☆17Updated 2 years ago
• TencentAILabHealthcare / scPROTEIN
  ☆50Updated 3 months ago
• CompBioT / SCAD
  ☆9Updated last year