Alternatives and similar repositories for scMulan

Users that are interested in scMulan are comparing it to the libraries listed below

• biomed-AI / CellFM
  ☆55Updated last month
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆70Updated last week
• labomics / midas
  ☆56Updated 2 weeks ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆66Updated 4 months ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆67Updated last year
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆44Updated 10 months ago
• theislab / CFGen
  ☆17Updated this week
• QuKunLab / MultiomeBenchmarking
  ☆47Updated 3 months ago
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆88Updated last week
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆128Updated 4 months ago
• theislab / scTab
  ☆59Updated 9 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆94Updated 3 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆54Updated 11 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆142Updated last year
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆52Updated 5 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆82Updated last week
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆69Updated last year
• bowang-lab / DeepVelo
  ☆47Updated last year
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆24Updated 3 months ago
• JiangBioLab / DeepCCI
  ☆21Updated 2 years ago
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆49Updated 3 weeks ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated 8 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆97Updated 3 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆86Updated last year
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆78Updated 3 months ago
• TencentAILabHealthcare / scTranslator
  ☆36Updated 3 weeks ago
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆62Updated last year
• madilabcode / scNET
  ☆42Updated 2 weeks ago
• QuKunLab / SPACEL
  ☆58Updated 11 months ago
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆31Updated 3 months ago